Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 6.4e-177 624.0 326 100.0
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 7.5e-93 344.7 313 63.6
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.3e-92 344.0 328 63.1
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.4e-91 340.5 327 62.1
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.9e-91 340.1 284 66.9
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.4e-91 339.7 275 67.6
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 5.4e-91 338.6 229 76.9
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 9.2e-91 337.8 262 71.0
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.2e-90 337.4 253 74.7
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.2e-90 337.4 255 71.4
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.1e-90 336.7 324 61.7
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 3.5e-90 335.9 265 67.9
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 3.5e-90 335.9 233 76.4
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.5e-90 335.9 315 61.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 3.5e-90 335.9 315 62.2
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.5e-90 335.9 261 71.3
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.0e-89 334.3 279 65.6
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.0e-89 334.3 306 64.1
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-89 334.0 302 64.2
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.3e-89 334.0 335 60.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.3e-89 334.0 323 61.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.3e-89 333.2 303 62.7
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.3e-89 333.2 264 68.6
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.3e-89 333.2 276 65.6
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 3.0e-89 332.8 307 63.5
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.1e-88 330.9 296 64.9
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.1e-88 330.9 247 70.9
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.5e-88 329.7 251 66.9
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 2.5e-88 329.7 271 69.0
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.3e-88 329.3 310 62.6
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 3.3e-88 329.3 312 62.8
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.2e-87 327.4 251 70.9
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.2e-87 327.4 229 76.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.2e-87 327.4 258 67.4
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.6e-87 327.0 280 66.1
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.1e-87 326.6 267 67.0
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.1e-87 326.6 263 68.1
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.8e-87 326.2 290 64.5
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.6e-87 325.9 258 69.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 4.7e-87 325.5 288 63.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 6.2e-87 325.1 295 64.4
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.1e-86 324.3 263 67.7
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.1e-86 324.3 292 63.7
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.4e-86 323.9 249 71.9
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.8e-86 323.6 314 59.9
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.8e-86 323.6 298 64.4
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.4e-86 323.2 265 70.2
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 6.8e-86 321.6 255 69.0
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 8.9e-86 321.2 324 58.3
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.2e-85 320.9 264 66.7
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.5e-85 320.5 247 71.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.0e-85 320.1 305 59.7
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 2.6e-85 319.7 233 71.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.6e-85 319.7 314 59.2
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 5.8e-85 318.5 323 58.8
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.3e-84 317.4 315 60.6
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.7e-84 317.0 306 62.7
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.7e-84 317.0 321 57.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.7e-84 317.0 321 57.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.2e-84 316.6 282 62.4
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.9e-84 316.2 260 63.8
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.9e-84 316.2 276 64.1
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 3.8e-84 315.8 320 57.8
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.1e-83 314.3 284 62.3
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.1e-83 314.3 313 58.1
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.4e-83 313.9 195 82.6
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.9e-83 313.5 281 63.0
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.9e-83 313.5 301 61.1
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 2.4e-83 313.2 286 61.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 3.2e-83 312.8 254 65.0
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 2.7e-82 309.7 317 56.5
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.7e-82 309.7 198 79.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.5e-82 309.3 183 86.9
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 4.6e-82 308.9 232 69.8
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 4.6e-82 308.9 187 83.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 4.6e-82 308.9 327 56.6
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 6.0e-82 308.5 319 58.3
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 1.0e-81 307.8 220 72.7
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.7e-81 307.0 299 59.2
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.3e-81 306.6 209 75.6
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.5e-80 303.9 239 69.5
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.9e-80 303.5 262 63.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 2.5e-80 303.1 229 70.3
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.2e-79 300.8 183 79.8
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.6e-79 300.4 298 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.8e-79 299.7 254 66.1
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 8.1e-79 298.1 253 63.6
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 4.4e-77 292.4 296 56.4
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.4e-75 287.3 168 86.3
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.1e-74 283.5 242 63.2
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.3e-73 280.8 253 63.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.3e-73 280.0 168 83.9
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.1e-71 273.5 263 59.3
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.0e-70 269.2 279 51.3
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.4e-67 260.0 409 42.5
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 9.3e-67 258.1 253 57.3
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.3e-65 253.4 155 81.9
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 8.7e-65 251.5 310 51.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 5.6e-64 248.8 208 64.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.3e-63 247.7 180 72.8
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 5.5e-59 232.3 207 63.3
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 9.3e-59 231.5 135 83.0
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 3.5e-58 229.6 280 49.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 2.8e-55 219.9 255 52.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.8e-54 217.2 205 62.4
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 2.5e-51 206.8 290 51.0
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 5.5e-51 205.7 209 51.2
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.7e-47 193.0 188 60.6
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 3.3e-40 169.9 214 51.9
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.7e-39 167.5 91 91.2
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 8.5e-28 128.6 120 59.2
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 4.7e-26 122.9 120 56.7
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.4e-22 111.3 94 61.7
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 4.7e-18 96.3 48 83.3
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.4e-17 94.7 92 58.7
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.0e-16 90.9 85 61.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 5.7e-16 89.4 50 70.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.7e-15 86.7 47 85.1
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.5e-12 75.9 154 42.9
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 9.4e-11 72.0 41 82.9
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 3.7e-07 60.1 30 90.0
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 4.8e-07 59.7 86 45.3


User provided reference genes

Program Settings