Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1783.5 915 100.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1419.8 914 79.6
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1394.8 931 77.4
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1329.7 910 75.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1329.7 917 75.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1327.0 915 74.9
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1325.8 911 75.2
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1322.4 915 74.6
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1321.2 908 75.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1317.0 989 70.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1312.0 913 73.8
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1312.0 916 73.8
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1299.6 915 73.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1297.7 919 73.2
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1297.0 913 73.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1293.9 913 73.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1293.5 933 72.2
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1293.1 931 72.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1291.6 915 72.8
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1287.7 913 73.1
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1285.8 917 73.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1250.7 912 71.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1243.8 913 72.0
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1239.9 907 70.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1238.4 1071 63.9
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1234.6 922 70.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1231.1 1078 62.3
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1228.8 914 69.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1227.6 952 67.5
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1223.8 926 68.9
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1223.4 839 74.9
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1221.5 909 69.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1218.4 907 70.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1216.8 914 69.3
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1216.4 913 67.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1216.1 923 69.3
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1215.3 907 69.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1210.7 915 69.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1204.9 913 68.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1204.1 909 69.0
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1199.9 930 68.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1198.7 911 68.1
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1193.3 863 71.1
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1190.3 864 71.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1172.9 914 65.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1170.6 909 67.1
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1169.8 960 64.3
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1165.6 926 68.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1165.6 906 66.9
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1145.2 904 65.8
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1138.3 772 76.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1129.8 864 67.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1129.8 909 64.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1117.1 910 64.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1115.9 906 63.8
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 916 64.1
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1108.6 909 63.7
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1106.3 914 65.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 915 63.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1102.4 900 63.8
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1100.9 915 62.7
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1098.6 909 62.7
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 909 63.5
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1094.7 915 62.5
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1094.7 908 63.3
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1094.0 975 60.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 918 64.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 908 63.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1092.0 909 63.9
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1076.6 914 61.7
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 2.1e-310 1068.9 907 62.4
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.8e-310 1068.5 908 62.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.7e-307 1059.3 923 63.7
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.1e-306 1056.6 909 60.8
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.6e-305 1051.2 865 63.9
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 6.2e-302 1040.8 937 58.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.1e-297 1025.8 752 70.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 6.0e-297 1024.2 1004 55.8
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.0e-296 1021.9 910 59.0
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.1e-296 1021.1 864 61.9
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 927 57.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.5e-292 1008.1 907 59.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 5.8e-292 1007.7 913 60.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.9e-291 1005.4 1139 51.6
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.9e-287 992.6 730 71.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.4e-276 955.3 732 69.0
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.3e-275 953.4 889 57.1
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.4e-269 933.3 949 54.5
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 9.0e-269 930.6 642 77.3
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 5.7e-263 911.4 921 54.0
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.4e-253 880.2 933 52.5
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.8e-253 879.8 634 71.0
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.3e-253 878.2 768 60.4
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.1e-249 866.3 717 62.6
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.0e-239 833.2 591 71.9
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-215 754.2 530 74.9
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.3e-211 740.0 570 66.7
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.7e-206 723.8 563 67.1
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 2.3e-179 633.6 430 75.3
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 9.9e-175 618.2 477 67.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-174 616.7 509 63.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 6.7e-171 605.5 909 41.0
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.4e-168 597.0 473 68.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 3.3e-162 576.6 437 68.0
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 9.0e-160 568.5 908 41.5
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.3e-155 553.9 605 53.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.1e-146 525.0 904 39.5
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 2.5e-146 523.9 916 37.9
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.0e-143 514.2 406 64.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 9.4e-133 478.8 924 36.9
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 3.8e-126 456.8 302 78.5
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 6.5e-118 429.5 625 42.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.7e-102 378.3 244 80.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.4e-98 364.0 341 57.8
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-96 357.5 573 39.6
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.0e-94 352.4 279 64.9
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.6e-92 344.0 228 77.2
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.0e-91 340.5 678 37.5
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.1e-85 322.4 292 63.4
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.9e-73 280.4 610 36.9
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.9e-72 278.5 221 67.4
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 9.9e-66 256.1 260 52.7
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.2e-55 222.6 152 72.4
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.3e-49 202.6 134 75.4
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.2e-49 201.8 143 69.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.2e-40 171.4 103 83.5
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 8.7e-38 163.3 117 66.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 5.7e-37 160.6 157 51.6
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.4e-32 146.0 253 37.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.1e-31 142.1 132 55.3
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 4.3e-29 134.4 195 42.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.7e-28 132.5 202 37.6
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.1e-24 119.8 112 52.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.6e-23 115.9 143 51.7
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 5.7e-21 107.5 145 48.3
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.4e-21 107.1 120 51.7
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-20 105.1 105 55.2
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 3.7e-20 104.8 186 40.3
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.5e-18 98.2 100 58.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.3e-17 96.3 80 70.0
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.6e-13 82.0 244 32.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.7e-12 79.3 87 56.3
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.1e-11 74.7 69 56.5
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.9e-10 70.9 81 48.1
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.7e-10 70.5 113 39.8
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.0e-09 70.1 130 40.0
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.3e-09 69.7 130 40.0
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 2.9e-09 68.6 85 42.4
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 6.5e-09 67.4 51 62.7
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 6.5e-09 67.4 401 23.7
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 4.7e-07 61.2 969 19.3


User provided reference genes

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