Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 4.0e-83 311.2 140 100.0
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.2e-68 260.8 134 82.8
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 8.0e-68 260.4 132 83.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.2e-66 256.5 136 79.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.0e-66 255.8 139 77.0
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 78.4
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.7e-65 252.7 135 78.5
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.7e-65 251.5 133 80.5
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 6.4e-65 250.8 134 80.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 8.3e-65 250.4 136 76.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.9e-64 249.2 136 76.5
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 79.9
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 79.9
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 80.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.4e-64 248.8 135 78.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.4e-64 247.7 136 76.5
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 7.0e-64 247.3 128 82.8
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 7.0e-64 247.3 134 80.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.0e-64 247.3 134 79.1
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.2e-63 246.5 134 76.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-63 246.5 136 76.5
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-63 246.1 135 77.8
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 131 76.3
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-63 246.1 135 76.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.7e-63 245.4 135 78.5
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.5e-63 245.0 135 78.5
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 6.0e-63 244.2 134 77.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 6.0e-63 244.2 135 74.8
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.8e-63 243.8 135 76.3
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.0e-62 243.4 135 75.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.0e-62 243.4 136 74.3
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.3e-62 243.0 131 77.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.7e-62 242.7 135 74.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 77.6
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.3e-62 242.3 135 72.6
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.0e-62 241.9 136 74.3
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.9e-62 241.5 129 79.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 75.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.9e-62 241.5 130 76.9
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 5.0e-62 241.1 135 74.1
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 5.0e-62 241.1 136 73.5
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 5.0e-62 241.1 134 76.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.6e-62 240.7 136 73.5
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 8.6e-62 240.4 134 74.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 8.6e-62 240.4 136 75.0
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-61 240.0 137 75.2
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 74.8
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.9e-61 239.2 135 74.8
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 2.5e-61 238.8 135 74.8
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 5.6e-61 237.7 134 73.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 7.3e-61 237.3 134 73.9
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.5e-61 236.9 138 72.5
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-60 236.1 130 75.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-60 236.1 135 71.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.8e-60 235.3 137 70.8
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.6e-60 235.0 136 72.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 4.7e-60 234.6 135 72.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.2e-60 234.2 135 72.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.2e-60 234.2 130 74.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 8.1e-60 233.8 134 73.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 8.1e-60 233.8 135 71.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-59 233.4 135 71.9
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.8e-59 232.6 135 73.3
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.8e-59 232.6 135 71.1
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.8e-59 232.6 129 76.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-59 232.3 138 70.3
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.0e-59 231.5 135 72.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 4.0e-59 231.5 136 71.3
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 5.2e-59 231.1 133 72.2
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 6.8e-59 230.7 134 74.6
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.9e-59 230.3 136 70.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 8.9e-59 230.3 130 73.8
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 68.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.2e-58 229.9 134 73.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-58 229.9 132 71.2
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.2e-58 229.9 136 70.6
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 73.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.5e-58 229.6 131 74.8
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 73.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 71.1
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 71.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.4e-58 228.4 132 72.0
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 3.4e-58 228.4 134 71.6
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 7.5e-58 227.3 134 73.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.5e-58 227.3 133 69.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 7.5e-58 227.3 126 75.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 7.5e-58 227.3 128 71.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 70.9
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.3e-57 226.5 119 82.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 70.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.9e-57 225.3 135 70.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 70.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.7e-57 224.9 127 73.2
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 6.4e-57 224.2 134 71.6
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 6.4e-57 224.2 134 71.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.3e-57 223.8 134 67.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.1e-56 223.4 131 70.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.4e-56 223.0 133 72.2
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 70.4
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.9e-56 222.6 135 70.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.1e-56 221.5 131 72.5
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.4e-56 221.1 133 71.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 7.1e-56 220.7 129 72.1
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.2e-56 220.3 121 73.6
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.1e-55 219.2 120 78.3
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.0e-55 217.6 133 70.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 6.0e-55 217.6 125 74.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 65.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.0e-54 215.3 134 64.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.1e-54 214.5 130 67.7
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.1e-54 214.5 173 59.5
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.9e-53 212.6 135 69.6
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-53 212.2 121 74.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.3e-53 211.8 121 71.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 5.6e-53 211.1 130 68.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.1e-52 207.2 130 66.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 8.1e-52 207.2 129 68.2
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.1e-51 205.3 126 69.0
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 8.9e-51 203.8 129 69.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.0e-50 202.6 120 69.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-49 199.9 121 69.4
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.9e-49 198.7 120 67.5
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.2e-48 195.3 129 65.1
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.2e-48 193.7 129 62.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.6e-47 193.0 128 65.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-47 192.6 135 60.0
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.7e-47 192.2 129 63.6
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.5e-45 186.4 101 78.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.5e-45 185.7 129 62.0
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 9.6e-45 183.7 129 58.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-44 182.2 130 63.1
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.1e-44 180.6 129 60.5
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.1e-43 180.3 102 73.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.8e-43 179.5 106 68.9
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 4.4e-42 174.9 136 61.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.9e-40 169.5 123 62.6
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.4e-40 169.1 118 61.9
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.8e-39 164.1 120 60.8
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-38 163.3 96 74.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.1e-36 156.0 98 67.3
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.8e-35 152.9 85 74.1
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 9.9e-34 147.1 75 84.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 8.4e-33 144.1 141 44.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.3e-29 131.7 71 76.1
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 6.9e-27 124.4 74 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.1e-24 114.4 107 51.4
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-23 112.5 63 73.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-22 110.5 78 60.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.1e-19 100.5 80 56.2


User provided reference genes

Program Settings