Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 6.5e-227 790.8 529 100.0
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 2.5e-130 469.9 560 67.9
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 2.8e-129 466.5 559 63.9
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 5.3e-128 462.2 563 65.4
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 4.2e-125 452.6 558 67.0
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 5.1e-123 445.7 497 64.2
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.6e-121 440.7 551 63.9
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 2.1e-121 440.3 564 64.5
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 2.3e-115 420.2 560 64.3
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 1.9e-114 417.2 550 63.3
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 2.4e-112 410.2 560 53.4
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 2.2e-110 403.7 491 58.5
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 3.8e-110 402.9 557 53.0
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 1.9e-109 400.6 496 64.1
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.9e-109 400.6 565 60.9
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 2.1e-108 397.1 546 53.8
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 1.3e-107 394.4 580 53.1
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 8.2e-105 385.2 500 60.2
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 3.1e-104 383.3 467 66.0
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 3.4e-103 379.8 499 56.1
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 1.7e-102 377.5 485 65.8
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 2.5e-101 373.6 436 62.6
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 3.2e-101 373.2 566 60.4
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.2e-100 371.3 523 53.7
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.2e-100 371.3 558 56.8
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 1.6e-100 370.9 534 51.7
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 7.9e-100 368.6 489 63.4
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 1.8e-99 367.5 486 56.8
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 2.3e-99 367.1 447 59.5
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 2.3e-99 367.1 566 59.9
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 5.1e-99 365.9 447 59.5
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 1.5e-98 364.4 489 53.6
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.1e-96 358.2 446 59.4
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 1.4e-96 357.8 584 56.3
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 1.8e-96 357.5 507 58.6
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 4.1e-96 356.3 489 60.5
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 1.5e-95 354.4 461 55.5
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 2.0e-95 354.0 464 62.9
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 4.5e-95 352.8 460 55.2
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 2.9e-94 350.1 471 62.2
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 8.5e-94 348.6 563 60.0
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.1e-93 348.2 507 51.9
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 1.9e-93 347.4 486 62.6
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 2.5e-93 347.1 464 62.3
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 2.5e-93 347.1 522 52.3
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 3.6e-92 343.2 472 61.9
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 7.9e-92 342.0 484 63.8
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 2.3e-91 340.5 519 52.8
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 5.1e-91 339.3 478 61.3
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 8.8e-91 338.6 490 59.0
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 1.1e-90 338.2 486 51.9
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 3.3e-90 336.7 430 55.8
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 8.2e-89 332.0 532 51.1
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 4.1e-88 329.7 554 48.4
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.3e-88 329.3 548 48.5
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 4.5e-87 326.2 519 47.4
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 5.9e-87 325.9 445 56.4
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 2.6e-82 310.5 486 49.8
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 2.0e-79 300.8 489 51.9
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 2.2e-78 297.4 565 36.6
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 1.1e-77 295.0 398 61.1
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 1.5e-77 294.7 493 50.9
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 3.2e-77 293.5 474 49.2
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 2.1e-76 290.8 281 58.0
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 8.0e-76 288.9 434 55.3
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 1.5e-74 284.6 502 47.2
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 5.7e-74 282.7 465 49.7
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 7.0e-72 275.8 282 55.3
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.0e-70 271.9 499 37.5
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 2.1e-68 264.2 533 37.7
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 2.7e-68 263.8 269 54.3
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 3.4e-66 256.9 374 59.4
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 7.0e-64 249.2 249 54.6
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 2.7e-63 247.3 341 57.5
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 3.6e-60 236.9 496 44.8
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.0e-59 235.3 268 50.7
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 1.0e-59 235.3 286 48.3
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 6.8e-59 232.6 302 62.9
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 2.6e-58 230.7 455 44.8
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 3.4e-58 230.3 479 54.3
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 4.9e-41 173.3 180 55.0
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 2.4e-40 171.0 185 53.0
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 1.1e-37 162.2 276 65.6
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 1.1e-37 162.2 276 66.7
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 6.8e-35 152.9 95 75.8
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 3.7e-33 147.1 124 61.3
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 3.7e-33 147.1 239 61.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 6.4e-33 146.4 418 31.1
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 6.0e-31 139.8 405 49.1
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 3.9e-30 137.1 122 56.6
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 5.2e-27 126.7 183 43.7
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 8.4e-25 119.4 496 31.0
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 2.4e-24 117.9 197 41.1
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 1.2e-23 115.5 93 62.4
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.6e-23 115.2 175 48.0
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.1e-23 114.8 106 52.8
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 6.6e-22 109.8 170 43.5
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-21 106.3 95 50.5
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 1.1e-19 102.4 140 45.0
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 6.9e-19 99.8 103 56.3
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 2.4e-16 91.3 97 49.5
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.1e-16 89.7 68 55.9
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 9.6e-13 79.3 207 30.0
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.4e-11 75.5 105 44.8
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 1.4e-11 75.5 111 40.5
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.8e-11 75.1 48 77.1
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 3.1e-11 74.3 328 26.8
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 4.0e-11 73.9 74 52.7
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 4.5e-10 70.5 145 36.6
FAN19G0964 Fragaria x ananassa HOM05D000564 ORTHO05D004145 8.4e-09 66.2 67 52.2
Nitab4.5_0004239g0020 Nicotiana tabacum HOM05D006674 ORTHO05D007954 4.2e-08 63.9 60 55.0
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 5.4e-08 63.5 47 61.7
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 6.0e-07 60.1 80 40.0
QL02p059301 Quercus lobata HOM05D006674 ORTHO05D012891 1.0e-06 59.3 45 66.7
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 1.0e-06 59.3 52 57.7
Nitab4.5_0009075g0020 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.0e-06 57.8 83 42.2


User provided reference genes

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