Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.4e-196 689.5 376 100.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.5e-158 561.6 376 78.5
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 6.5e-157 557.8 376 76.6
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 8.0e-155 550.8 376 77.9
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.0e-154 550.4 376 74.2
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.7e-152 543.1 375 72.5
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.8e-151 539.7 375 72.8
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 3.5e-150 535.4 374 72.7
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.5e-150 535.4 375 74.9
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 4.5e-150 535.0 375 71.5
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 5.0e-149 531.6 373 72.9
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.5e-148 530.0 375 70.7
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.7e-147 525.0 375 70.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 6.1e-147 524.6 375 70.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.3e-144 516.9 376 68.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.2e-144 516.2 333 77.2
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.9e-144 515.8 373 69.4
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 4.9e-144 515.0 376 68.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.9e-144 515.0 372 69.6
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.9e-144 515.0 376 69.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 6.3e-144 514.6 376 68.9
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 6.3e-144 514.6 376 68.4
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 6.3e-144 514.6 374 69.8
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.1e-143 513.8 372 69.1
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.4e-143 513.5 331 77.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.8e-143 513.1 376 68.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.8e-143 513.1 376 68.4
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.2e-143 512.3 378 69.6
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 4.1e-143 511.9 374 70.3
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 7.0e-143 511.1 330 76.1
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.7e-142 509.2 334 75.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 3.5e-142 508.8 332 76.5
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 5.9e-142 508.1 376 68.1
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.9e-140 503.1 334 73.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.5e-140 502.7 373 67.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.5e-140 502.7 371 68.5
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 5.6e-140 501.5 397 66.2
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 5.6e-140 501.5 373 71.0
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.2e-139 500.4 372 67.7
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.1e-139 498.0 333 73.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.0e-138 497.3 376 66.8
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-138 496.5 374 67.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.8e-138 496.5 395 64.8
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 4.0e-138 495.4 372 66.4
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 6.8e-138 494.6 376 67.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.9e-138 494.2 361 68.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.5e-137 493.4 375 67.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.4e-137 491.9 333 70.0
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 4.4e-137 491.9 371 67.7
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 7.5e-137 491.1 375 66.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 9.8e-137 490.7 371 68.5
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.3e-136 490.3 333 73.6
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.2e-136 489.6 374 66.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.7e-136 488.8 381 64.3
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.9e-136 488.4 331 72.2
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 6.4e-136 488.0 335 72.2
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.1e-135 487.3 334 73.1
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.4e-135 486.9 376 66.0
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.9e-135 486.5 330 72.7
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 2.4e-135 486.1 377 66.8
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 4.1e-135 485.3 333 72.1
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-134 483.8 331 71.6
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-134 483.8 376 64.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.0e-133 480.7 376 63.3
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.3e-133 479.6 450 59.3
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.1e-131 473.0 330 70.3
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.8e-130 469.9 364 64.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.8e-130 469.9 376 68.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.8e-130 469.9 374 65.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 5.2e-130 468.4 374 64.4
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.4e-129 465.7 427 58.3
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 4.9e-128 461.8 375 65.3
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 6.0e-126 454.9 281 78.3
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 6.6e-125 451.4 377 63.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.4e-122 443.7 332 66.9
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 4.0e-122 442.2 331 65.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 5.2e-122 441.8 329 67.8
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.6e-121 439.5 351 64.7
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 3.9e-117 425.6 303 68.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.5e-116 423.7 332 67.8
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 5.6e-116 421.8 278 77.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.4e-114 417.2 318 66.7
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.2e-113 414.1 263 75.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.4e-113 412.5 331 64.7
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 6.4e-112 408.3 314 66.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.0e-109 399.4 279 73.1
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.3e-108 395.6 279 79.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.8e-107 392.1 332 58.1
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 6.2e-107 391.7 360 59.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.9e-106 388.3 331 60.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 9.0e-106 387.9 278 77.3
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.5e-105 387.1 301 63.1
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 9.9e-105 384.4 278 70.1
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.3e-104 384.0 278 70.9
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.3e-104 384.0 270 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.2e-102 377.5 334 56.9
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 5.1e-101 372.1 329 57.8
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.6e-99 367.1 236 77.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.9e-95 353.6 274 66.1
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 6.0e-94 348.6 236 73.3
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.3e-93 347.4 272 61.8
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.8e-90 337.0 207 81.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 5.3e-90 335.5 351 49.3
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 6.0e-86 322.0 311 55.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 3.8e-80 302.8 198 75.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.1e-76 291.2 340 47.4
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 6.7e-69 265.4 341 44.0
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.1e-66 256.5 183 66.1
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.7e-59 234.2 435 35.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-53 214.2 219 53.4
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.7e-52 209.1 373 37.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-49 201.4 216 50.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.2e-47 192.2 160 62.5
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.4e-44 183.0 156 69.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.7e-38 162.9 151 59.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 4.0e-37 159.8 293 33.4
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.5e-31 141.4 148 53.4
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.3e-31 140.2 138 58.0
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.5e-28 131.3 120 59.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.2e-26 122.1 96 58.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.7e-25 120.6 75 76.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 3.9e-24 116.7 73 75.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.1e-23 115.2 120 48.3
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.3e-23 113.6 81 66.7
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.1e-22 110.9 295 27.8
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-21 107.8 77 72.7
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 2.7e-17 94.0 66 69.7
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.3e-08 65.1 111 34.2
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.5e-07 61.6 177 27.7
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 1.2e-06 58.5 103 34.0
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 1.6e-06 58.2 146 28.1
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 2.1e-06 57.8 150 26.0
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 6.2e-06 56.2 111 30.6
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 6.2e-06 56.2 108 35.2
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 6.2e-06 56.2 101 36.6
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 8.1e-06 55.8 89 36.0
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 8.1e-06 55.8 120 30.0
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 8.1e-06 55.8 102 34.3
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 8.1e-06 55.8 127 28.3
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 8.1e-06 55.8 104 30.8


User provided reference genes

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