Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 3.3e-24 114.4 65 100.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.5e-21 104.0 65 87.7
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-19 99.0 65 84.6
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.9e-19 98.6 65 83.1
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.5e-19 98.2 65 83.1
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.3e-19 96.3 66 83.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.3e-19 96.3 66 83.3
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 79.7
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 83.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.7e-18 94.7 63 82.5
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 2.7e-18 94.7 65 78.5
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 3.5e-18 94.4 66 80.3
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.0e-18 93.6 63 81.0
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.0e-18 93.6 65 81.5
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 7.9e-18 93.2 66 80.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 7.9e-18 93.2 62 82.3
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 7.9e-18 93.2 68 85.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.0e-17 92.8 64 78.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-17 91.3 65 78.5
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.1e-17 90.5 65 75.4
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 6.7e-17 90.1 66 78.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 6.7e-17 90.1 63 79.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.1e-16 89.4 63 79.4
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.5e-16 89.0 66 80.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 3.3e-16 87.8 65 75.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.3e-16 87.8 65 78.5
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.3e-16 87.8 65 75.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.3e-16 87.8 64 76.6
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.7e-16 87.0 58 81.0
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 7.4e-16 86.7 65 76.9
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.4e-16 86.7 64 71.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.3e-15 85.9 69 79.7
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.6e-15 85.5 69 71.0
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 2.1e-15 85.1 64 79.7
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.8e-15 84.7 68 72.1
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.7e-15 84.3 66 69.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.7e-15 84.3 66 69.7
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.8e-15 84.0 69 71.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 4.8e-15 84.0 69 72.5
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.3e-15 83.6 60 71.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 8.2e-15 83.2 55 81.8
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 8.2e-15 83.2 63 74.6
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 4.1e-14 80.9 72 69.4
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 4.1e-14 80.9 72 69.4
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 5.3e-14 80.5 66 74.2
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 9.0e-14 79.7 65 70.8
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.0e-14 79.7 74 63.5
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.0e-14 79.7 74 63.5
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.0e-13 78.6 74 62.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-13 78.6 69 69.6
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 2.6e-13 78.2 74 64.9
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.6e-13 78.2 66 65.2
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 3.4e-13 77.8 74 67.6
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 3.4e-13 77.8 74 64.9
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.3e-12 75.9 58 75.9
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.2e-12 75.1 68 66.2
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.1e-11 72.8 66 68.2
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 1.4e-11 72.4 74 60.8
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.9e-11 72.0 68 67.6
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 7.2e-11 70.1 76 60.5
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 7.2e-11 70.1 67 62.7
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.3e-09 65.9 74 55.4
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 3.0e-09 64.7 41 78.0
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 5.1e-09 63.9 81 51.9
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 6.7e-09 63.5 81 51.9
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 6.7e-09 63.5 41 75.6
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.7e-09 63.5 63 61.9
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.1e-08 62.8 64 59.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.1e-08 62.8 60 63.3
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-08 62.4 59 62.7
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 1.5e-08 62.4 81 50.6
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.5e-08 61.6 61 57.4
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.5e-08 61.6 63 58.7
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.5e-08 61.6 58 62.1
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 3.3e-08 61.2 68 57.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 3.3e-08 61.2 61 62.3
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.3e-08 61.2 62 59.7
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 5.7e-08 60.5 41 70.7
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 5.7e-08 60.5 41 70.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.7e-08 60.5 65 55.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.7e-08 60.5 58 62.1
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.7e-08 60.5 63 57.1
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 5.7e-08 60.5 58 62.1
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 5.7e-08 60.5 62 61.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.4e-08 60.1 63 58.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 7.4e-08 60.1 63 58.7
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 7.4e-08 60.1 62 58.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 9.7e-08 59.7 58 60.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.7e-08 59.7 62 58.1
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.7e-08 59.7 62 58.1
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.7e-08 59.7 62 58.1
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.7e-08 59.7 58 62.1
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.3e-07 59.3 78 48.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.3e-07 59.3 62 56.5
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-07 58.9 79 48.1
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.6e-07 58.9 79 48.1
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.6e-07 58.9 58 62.1
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.6e-07 58.9 63 55.6
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-07 58.2 64 56.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.8e-07 58.2 58 58.6
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.8e-07 58.2 62 56.5
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.8e-07 58.2 58 62.1
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 3.7e-07 57.8 41 68.3
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 3.7e-07 57.8 41 68.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.7e-07 57.8 59 59.3
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 63 55.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 63 55.6
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.7e-07 57.8 58 60.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 3.7e-07 57.8 58 60.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 65 55.4
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 4.8e-07 57.4 62 54.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.8e-07 57.4 58 58.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 64 54.7
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 64 54.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.8e-07 57.4 58 60.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 4.8e-07 57.4 62 58.1
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.8e-07 57.4 62 56.5
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 6.3e-07 57.0 41 65.9
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 6.3e-07 57.0 59 55.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.3e-07 57.0 65 55.4
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 6.3e-07 57.0 65 58.5
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 6.3e-07 57.0 59 59.3
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 8.2e-07 56.6 59 59.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.2e-07 56.6 58 60.3
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 8.2e-07 56.6 63 55.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.1e-06 56.2 62 54.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.1e-06 56.2 62 53.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.1e-06 56.2 68 52.9
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.1e-06 56.2 68 52.9
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.4e-06 55.8 62 56.5
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.4e-06 55.8 63 55.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-06 55.8 61 57.4
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 61 62.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 62 53.2
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.8e-06 55.5 68 57.4
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.8e-06 55.5 56 64.3
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.8e-06 55.5 51 66.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.8e-06 55.5 58 58.6
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.4e-06 55.1 63 55.6
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 2.4e-06 55.1 53 54.7
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 2.4e-06 55.1 62 54.8
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.4e-06 55.1 59 57.6
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 2.4e-06 55.1 63 54.0
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 53.3
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 6.9e-06 53.5 58 56.9
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 6.9e-06 53.5 64 53.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.0e-06 53.1 64 51.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.0e-06 53.1 64 51.6
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.0e-06 53.1 58 56.9
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 9.0e-06 53.1 60 61.7


User provided reference genes

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