Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1530.4 798 100.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1337.4 798 87.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1271.1 802 82.0
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1265.8 802 82.0
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1245.3 798 79.8
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1235.3 805 78.9
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1233.4 799 79.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1231.5 797 79.8
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1221.8 804 79.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1221.8 799 79.3
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1219.5 799 79.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1210.3 798 78.8
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1208.7 797 79.0
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1208.4 814 77.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1204.1 813 77.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1201.4 792 77.7
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1198.7 799 78.3
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1196.4 779 79.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1194.5 815 77.4
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1192.2 799 77.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1186.8 808 77.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1184.5 797 77.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 792 78.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1181.4 802 76.6
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1179.1 897 70.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1176.4 792 77.8
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 803 76.1
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 807 76.3
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 806 76.6
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1166.4 846 72.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1164.1 801 75.9
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1162.9 756 79.4
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 809 76.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1161.0 872 71.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1157.5 792 75.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1154.4 799 75.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1152.9 807 74.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1151.3 801 75.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1150.6 801 75.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1149.0 806 75.2
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1148.3 798 73.7
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 795 75.1
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1146.0 847 72.1
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 802 74.2
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1143.3 796 74.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1137.9 805 74.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 797 74.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 798 72.7
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1129.0 803 74.1
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1128.2 803 73.7
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 829 72.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1125.9 799 74.2
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1122.5 799 73.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 787 73.7
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1115.1 806 73.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1114.0 788 73.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 799 73.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1112.1 787 73.7
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 795 72.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1104.4 788 72.2
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 791 73.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 808 71.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1101.7 794 71.9
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 807 70.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 809 71.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 808 70.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 796 71.6
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 788 72.8
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 809 71.8
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 789 71.1
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1091.6 798 74.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 793 71.9
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 786 71.9
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 786 71.9
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 798 71.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 800 71.2
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 798 71.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 800 70.6
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1081.2 795 70.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 764 74.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 814 69.5
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 786 71.6
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 5.5e-312 1074.3 786 71.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 5.5e-312 1074.3 786 71.6
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.1e-310 1069.7 795 70.2
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 8.6e-308 1060.1 647 83.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 798 70.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.8e-304 1047.3 796 68.8
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.8e-304 1046.6 786 70.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 9.8e-304 1046.6 647 82.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.7e-301 1038.5 647 82.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.5e-299 1032.7 801 70.4
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.4e-296 1021.5 803 67.4
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.4e-295 1017.3 803 66.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 8.1e-290 1000.3 785 67.3
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.0e-288 995.7 786 68.2
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 4.2e-286 988.0 795 65.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.2e-285 986.5 798 67.3
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.1e-285 985.7 804 66.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.5e-283 979.5 786 66.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.3e-283 978.0 786 67.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.4e-281 972.2 840 62.6
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.2e-277 959.9 811 62.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 9.6e-275 950.3 787 64.8
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.8e-271 938.3 779 65.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-269 933.3 788 65.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.3e-260 903.3 816 60.0
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.7e-258 895.2 823 59.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.6e-256 889.0 716 68.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.3e-254 880.6 799 58.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.1e-253 877.9 793 60.3
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-232 809.7 638 68.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.8e-228 796.6 644 65.8
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.6e-211 739.6 480 79.6
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.8e-209 733.4 808 50.7
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.9e-194 682.9 855 46.9
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.9e-194 682.9 855 46.9
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 8.9e-188 661.4 876 45.1
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.6e-179 633.3 851 45.2
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.9e-175 619.4 621 56.7
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.9e-169 600.5 658 51.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.9e-169 600.5 459 66.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.1e-168 597.0 532 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.9e-167 592.8 833 43.1
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.3e-159 567.8 592 53.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.3e-159 567.0 434 66.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.6e-144 517.7 404 69.1
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 6.1e-112 409.5 606 44.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.5e-107 393.3 617 44.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 8.0e-88 329.3 213 82.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.3e-81 307.4 695 36.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-75 288.9 207 72.9
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.2e-75 288.9 766 30.5
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-73 279.6 197 73.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-72 278.9 197 73.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-72 278.9 197 73.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 4.9e-69 266.9 211 66.8
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.6e-62 244.6 236 57.6
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-62 244.2 479 38.0
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.3e-56 225.7 542 34.7
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.4e-52 210.3 121 81.0
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-50 205.7 131 80.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 9.6e-49 199.5 807 27.3
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.1e-40 169.9 192 53.1
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.4e-39 169.1 87 85.1
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.4e-39 169.1 87 85.1
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 9.0e-39 166.4 92 83.7
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.5e-35 154.5 361 32.4
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 4.1e-31 141.0 166 47.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.0e-31 139.8 130 56.9
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-24 119.4 89 62.9
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 8.2e-24 116.7 75 82.7
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.9e-21 108.2 71 71.8
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.5e-20 104.0 108 51.9
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-19 102.8 154 45.5
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-19 102.1 74 66.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 5.1e-18 97.4 58 84.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-17 96.3 112 40.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.4e-17 93.6 85 56.5
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.0e-14 85.5 109 46.8
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.2e-13 82.0 66 57.6
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.1e-12 79.7 71 56.3
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.4e-12 79.3 77 54.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 6.1e-11 73.9 52 80.8
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 52 76.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.6e-09 68.6 52 69.2
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.3e-09 68.2 77 46.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 3.3e-09 68.2 51 76.5
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.3e-09 68.2 247 30.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 2.2e-08 65.5 65 61.5


User provided reference genes

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