Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 3.3e-135 485.0 227 100.0
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 9.2e-114 413.7 228 85.1
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.6e-108 395.6 228 80.3
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 5.8e-108 394.4 227 79.7
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 7.6e-108 394.0 228 79.8
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 4.9e-107 391.3 228 77.6
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 4.9e-107 391.3 228 77.6
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 6.4e-107 391.0 228 78.5
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 1.9e-106 389.4 228 79.4
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.4e-106 389.0 228 77.6
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 3.2e-106 388.7 228 77.6
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 9.2e-106 387.1 228 78.1
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.2e-105 386.7 226 76.5
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 3.5e-105 385.2 228 77.6
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 4.6e-105 384.8 228 76.8
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 6.0e-105 384.4 228 78.1
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.0e-104 383.6 228 78.1
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.0e-104 383.6 228 78.1
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.0e-104 383.6 228 76.8
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.0e-104 383.6 228 76.8
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 5.1e-104 381.3 228 77.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.5e-103 379.8 228 77.2
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 3.3e-103 378.6 228 76.3
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 5.6e-103 377.9 228 75.4
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.8e-102 375.6 228 73.7
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 6.8e-101 370.9 228 75.9
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 8.9e-101 370.5 229 75.1
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 3.4e-100 368.6 228 75.0
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 5.8e-100 367.9 229 74.2
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 7.6e-100 367.5 229 73.4
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.2e-99 365.9 228 71.9
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 2.9e-99 365.5 229 73.4
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 4.9e-99 364.8 229 74.2
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.9e-98 362.8 229 72.9
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 2.4e-98 362.5 228 74.1
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 7.1e-98 360.9 228 74.1
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 9.3e-98 360.5 229 72.5
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 9.3e-98 360.5 229 72.1
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 1.2e-97 360.1 229 73.8
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 3.5e-97 358.6 228 72.4
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 7.8e-97 357.5 228 71.5
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.0e-96 357.1 228 70.6
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 3.0e-96 355.5 228 71.9
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 3.0e-96 355.5 228 73.7
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 3.9e-96 355.1 228 70.2
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 4.3e-95 351.7 230 72.2
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 5.6e-95 351.3 228 70.2
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 7.3e-95 350.9 230 71.7
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 7.3e-95 350.9 230 71.3
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 1.6e-94 349.7 228 69.7
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.8e-94 349.0 228 69.3
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 2.8e-94 349.0 228 69.7
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 4.8e-94 348.2 228 69.7
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 1.4e-93 346.7 230 69.6
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 1.5e-92 343.2 228 68.4
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.0e-92 342.8 227 65.6
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 2.6e-92 342.4 229 71.6
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 4.4e-92 341.7 228 68.4
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 7.6e-92 340.9 230 67.8
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 1.3e-91 340.1 232 67.2
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.3e-91 340.1 230 69.1
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 1.3e-91 340.1 228 67.5
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 2.2e-91 339.3 228 68.4
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.1e-90 337.0 230 66.5
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 1.4e-90 336.7 228 67.5
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 2.4e-90 335.9 228 71.1
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 5.4e-90 334.7 230 69.1
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 7.1e-90 334.3 228 65.8
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 4.6e-89 331.6 230 67.4
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 7.8e-89 330.9 228 72.4
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 7.8e-89 330.9 230 67.4
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 2.5e-87 325.9 228 65.4
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 2.5e-87 325.9 230 66.1
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 1.6e-86 323.2 230 66.1
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 6.2e-86 321.2 228 63.6
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.8e-85 319.7 229 63.8
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 4.0e-85 318.5 228 64.5
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.6e-84 315.8 228 64.9
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 3.4e-84 315.5 230 63.9
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 2.2e-83 312.8 227 60.8
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 4.9e-83 311.6 230 60.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 4.9e-83 311.6 230 60.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 4.9e-83 311.6 230 60.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 4.9e-83 311.6 230 60.9
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 6.4e-83 311.2 228 64.0
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 8.4e-83 310.8 230 60.9
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 1.4e-82 310.1 240 62.5
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.9e-82 309.7 231 63.2
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 2.4e-82 309.3 230 61.3
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.2e-81 307.0 230 62.2
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 4.6e-81 305.1 230 60.0
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 7.9e-81 304.3 230 60.9
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.9e-79 299.7 230 60.0
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 4.3e-79 298.5 219 60.3
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 7.4e-79 297.7 230 59.6
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 1.6e-78 296.6 181 74.6
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 8.1e-78 294.3 219 63.0
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 3.1e-77 292.4 228 56.6
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.2e-73 280.4 228 56.6
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 2.8e-70 269.2 229 56.3
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 2.4e-69 266.2 228 55.3
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 5.3e-69 265.0 227 56.8
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.1e-65 253.1 228 53.5
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 6.1e-65 251.5 228 53.1
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 4.1e-61 238.8 232 48.7
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.7e-57 226.1 132 74.2
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 4.6e-57 225.3 139 76.3
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 9.7e-55 217.6 249 44.2
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.1e-53 214.2 233 43.8
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 4.1e-45 185.7 265 43.4
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 2.0e-44 183.3 242 43.4
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.1e-41 173.3 99 81.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 5.7e-39 165.2 88 83.0
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 8.8e-32 141.4 95 66.3
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 8.8e-24 114.8 100 58.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 7.5e-23 111.7 72 66.7
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.3e-19 100.9 49 81.6
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 2.3e-19 100.1 49 79.6
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 5.0e-19 99.0 153 41.8


User provided reference genes

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