Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 0.0e+00 2009.2 1292 100.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 0.0e+00 1083.2 1269 58.6
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 1.1e-304 1050.4 1268 57.7
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.0e-267 924.9 1263 48.0
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 8.0e-263 911.4 1247 50.0
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-260 901.7 1260 54.4
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 5.8e-253 878.6 959 54.7
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.9e-251 873.6 1057 50.3
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 6.0e-250 868.6 1233 52.1
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.7e-244 849.4 1086 50.0
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 3.2e-243 846.3 1225 50.7
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 3.0e-241 839.7 1238 44.6
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.2e-239 834.3 1039 50.2
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 2.2e-236 823.5 1007 47.3
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 2.9e-236 823.2 1051 49.2
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 2.9e-236 823.2 1046 55.0
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.3e-233 814.3 1265 51.9
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 3.4e-229 799.7 1261 48.9
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.5e-226 789.6 1182 49.2
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 3.0e-225 786.6 1055 52.2
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.1e-224 784.6 1038 46.3
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 7.3e-224 781.9 1042 50.8
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 1.5e-221 774.2 1258 49.9
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 1.1e-219 768.1 1264 47.9
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.4e-219 767.7 1063 45.1
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 4.6e-218 762.7 1159 43.2
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 1.0e-217 761.5 1237 47.4
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 1.0e-217 761.5 1089 50.9
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 1.5e-216 757.7 1161 45.8
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.5e-213 747.7 1227 51.3
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 3.4e-213 746.5 1212 48.6
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 3.0e-209 733.4 1000 47.0
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 4.0e-206 723.0 1039 50.5
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 3.4e-205 719.9 1238 46.7
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 2.3e-201 707.2 947 42.9
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 2.6e-197 693.7 1166 45.8
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 4.5e-197 693.0 1066 49.3
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 2.2e-196 690.6 1045 43.5
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 4.2e-195 686.4 1003 46.1
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 5.5e-195 686.0 1036 43.8
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.8e-193 681.0 1160 40.9
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.6e-191 674.5 1160 48.4
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 3.7e-191 673.3 1025 48.5
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 2.5e-187 660.6 805 52.7
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 3.0e-185 653.7 1157 45.8
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 8.8e-185 652.1 1086 39.4
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 8.2e-183 645.6 1047 43.4
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 1.0e-180 638.6 965 46.0
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 1.0e-180 638.6 1082 37.9
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 8.5e-180 635.6 1158 44.6
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 1.4e-179 634.8 870 39.3
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.9e-179 634.4 1086 40.7
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 1.6e-178 631.3 1084 41.1
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 2.7e-178 630.6 1005 41.9
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 6.7e-177 625.9 1161 36.5
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 1.3e-175 621.7 1048 42.8
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.8e-174 617.8 845 47.0
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 4.2e-171 606.7 694 55.3
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 5.5e-171 606.3 1258 36.0
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 1.2e-170 605.1 1081 46.0
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 3.9e-169 600.1 652 57.1
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 6.7e-169 599.4 1076 47.2
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 5.7e-168 596.3 1004 42.0
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.7e-167 594.7 1259 41.6
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.7e-167 594.7 1087 39.7
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.1e-166 592.0 853 39.6
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 5.3e-166 589.7 1161 37.0
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 2.0e-165 587.8 1161 37.0
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 2.0e-165 587.8 957 40.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 2.9e-164 583.9 1161 36.8
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.9e-163 581.3 766 48.6
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 1.8e-161 574.7 795 38.4
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 3.7e-159 567.0 790 38.6
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 5.3e-158 563.1 795 38.2
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 2.0e-157 561.2 944 41.7
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 2.7e-154 550.8 699 39.2
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 8.8e-153 545.8 706 43.9
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 7.2e-147 526.2 931 34.4
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 1.3e-143 515.4 1063 38.2
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 2.2e-143 514.6 771 47.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 3.9e-140 503.8 768 46.5
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 8.9e-121 439.5 1031 35.9
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 9.2e-118 429.5 407 50.6
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 3.5e-117 427.6 1027 27.9
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 2.0e-112 411.8 638 34.6
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 9.9e-112 409.5 775 40.4
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.9e-107 395.2 665 47.5
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 5.8e-104 383.6 958 38.5
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.6e-98 364.4 813 29.2
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 9.9e-96 356.3 771 41.8
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.4e-88 331.3 792 29.4
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 2.5e-83 315.1 358 61.2
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.7e-74 284.6 346 59.0
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.7e-69 268.5 308 48.7
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 5.9e-64 250.8 776 34.1
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 3.0e-60 238.4 197 57.4
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 3.9e-60 238.0 223 52.9
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.3e-58 233.0 209 58.4
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 2.2e-58 232.3 597 29.3
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.4e-57 229.6 581 29.8
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 1.2e-43 183.3 311 56.9
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 2.6e-43 182.2 181 50.3
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.9e-38 166.0 328 35.4
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-36 158.7 207 47.3
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 6.8e-36 157.5 207 47.3
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 7.0e-25 120.9 235 33.6
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 3.5e-24 118.6 113 50.4
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.3e-22 112.1 430 24.4
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 1.6e-21 109.8 151 37.1
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 3.4e-19 102.1 97 52.6
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 4.1e-17 95.1 220 30.0
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.5e-16 92.0 120 45.0
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 6.0e-16 91.3 166 31.3
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 1.7e-15 89.7 493 34.3
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.6e-15 87.8 142 45.1
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 2.9e-10 72.4 200 30.5
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 1.1e-09 70.5 83 41.0
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 9.2e-09 67.4 62 46.8
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 2.1e-08 66.2 331 22.1
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 2.1e-08 66.2 263 24.0
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 2.7e-08 65.9 79 43.0
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 3.5e-08 65.5 252 22.6
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 4.6e-08 65.1 242 21.1
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 4.6e-08 65.1 242 21.1
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 6.0e-08 64.7 157 24.2
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 7.8e-08 64.3 232 25.9
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.0e-07 63.9 237 26.2
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.3e-07 63.5 377 36.1
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 1.3e-07 63.5 169 27.2
Aa31LG4G440 Aethionema arabicum HOM05D000891 ORTHO05D000761 2.3e-07 62.8 359 20.1
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 3.0e-07 62.4 192 27.1
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.9e-07 62.0 195 25.1
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 6.6e-07 61.2 249 26.1
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 6.6e-07 61.2 215 22.3
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 6.6e-07 61.2 144 31.2
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 6.6e-07 61.2 133 28.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 8.6e-07 60.8 210 24.8
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 8.6e-07 60.8 192 26.6
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 8.6e-07 60.8 210 24.8
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.1e-06 60.5 231 25.5
Prupe.3G083000 Prunus persica HOM05D000891 ORTHO05D000761 1.1e-06 60.5 256 22.3
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.5e-06 60.1 232 25.0
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 1.5e-06 60.1 179 26.8
MBI17_g15295_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.5e-06 60.1 182 24.2
Oeu033473.1 Olea europaea HOM05D000891 ORTHO05D000761 1.5e-06 60.1 257 19.5
PSO210G3738 Papaver somniferum HOM05D010315 ORTHO05D011376 1.5e-06 60.1 115 30.4
CsaV3_3G041130 Cucumis sativus L. HOM05D000891 ORTHO05D011021 1.9e-06 59.7 112 27.7
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 2.5e-06 59.3 226 22.6
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 4.3e-06 58.5 217 22.6
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 4.3e-06 58.5 287 22.3
MBI17_g01762_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.6e-06 58.2 182 23.6
MBI18_g03650_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D243882 5.6e-06 58.2 164 25.0
PSO210G7725 Papaver somniferum HOM05D010315 ORTHO05D011376 5.6e-06 58.2 114 28.9
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 5.6e-06 58.2 120 30.0
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 7.3e-06 57.8 139 26.6
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 7.3e-06 57.8 207 22.7
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 9.5e-06 57.4 192 26.0
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 9.5e-06 57.4 95 33.7
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 9.5e-06 57.4 95 33.7
DCAR_022873 Daucus carota HOM05D000175 ORTHO05D010751 9.5e-06 57.4 139 28.8


User provided reference genes

Program Settings