Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 4.4e-311 1070.5 530 100.0
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 4.1e-213 745.0 508 72.8
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 1.7e-211 739.6 440 80.0
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.8e-189 666.4 496 66.5
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 2.7e-188 662.5 502 67.1
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.0e-187 660.6 498 66.5
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.3e-187 660.2 496 66.1
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 2.9e-187 659.1 506 66.0
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.2e-186 655.2 496 65.7
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.6e-185 653.3 504 63.7
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 2.7e-185 652.5 505 66.3
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.4e-183 645.6 484 65.7
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 5.7e-183 644.8 500 64.2
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 7.5e-183 644.4 455 69.7
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 6.3e-182 641.3 508 61.8
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.1e-181 640.6 510 62.5
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.1e-181 639.0 483 64.4
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.2e-180 637.1 500 63.2
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 3.5e-180 635.6 458 69.0
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 1.0e-179 634.0 428 70.1
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.0e-179 634.0 509 62.3
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 1.7e-179 633.3 495 63.2
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 5.6e-178 628.2 496 64.3
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 9.5e-178 627.5 502 62.7
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 8.0e-177 624.4 498 63.7
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.0e-176 624.0 519 60.7
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.0e-176 624.0 519 60.7
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 8.9e-176 620.9 513 61.8
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 2.0e-175 619.8 503 65.2
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 5.7e-175 618.2 513 60.2
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.7e-175 618.2 489 64.8
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.3e-174 617.1 514 61.1
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.7e-174 616.7 509 61.1
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 4.9e-174 615.1 469 65.7
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 1.8e-173 613.2 492 62.6
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 4.1e-173 612.1 510 60.2
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 9.2e-173 610.9 498 61.6
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.0e-172 609.8 469 65.2
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.5e-172 609.0 469 65.0
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.0e-171 607.4 510 60.0
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 1.7e-171 606.7 441 66.7
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.0e-171 605.9 489 63.8
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 6.6e-171 604.7 473 63.0
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 8.6e-171 604.4 512 60.2
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 3.3e-170 602.4 497 61.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 5.6e-170 601.7 485 64.1
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 7.3e-170 601.3 500 57.8
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 1.6e-169 600.1 513 60.4
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.6e-169 600.1 495 59.8
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 6.2e-169 598.2 490 61.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 8.0e-169 597.8 471 63.3
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 4.0e-168 595.5 478 61.3
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 5.2e-168 595.1 424 67.0
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.2e-167 594.0 492 61.2
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.5e-167 593.6 497 59.8
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 2.0e-167 593.2 496 60.5
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 2.0e-167 593.2 497 61.0
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.3e-166 590.5 497 60.6
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.7e-166 590.1 500 61.0
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.9e-166 588.6 488 62.1
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 4.9e-166 588.6 429 65.3
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 1.9e-165 586.6 474 61.0
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 3.2e-165 585.9 403 68.2
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 3.2e-165 585.9 449 65.5
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 5.4e-165 585.1 560 55.7
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 7.8e-164 581.3 472 61.0
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.3e-163 580.5 452 62.6
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.3e-163 580.5 477 62.5
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.3e-163 580.5 468 61.1
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 2.3e-163 579.7 482 59.3
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 3.0e-163 579.3 452 62.6
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 3.9e-163 578.9 506 58.5
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 5.0e-163 578.6 439 63.1
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 3.3e-162 575.9 436 65.4
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 3.3e-162 575.9 497 60.2
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.6e-161 573.5 516 56.8
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 2.8e-161 572.8 480 59.4
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 6.2e-161 571.6 428 63.8
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 3.1e-160 569.3 485 58.6
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 2.7e-156 556.2 492 55.7
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 1.7e-155 553.5 480 57.5
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 3.9e-155 552.4 480 57.5
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 8.6e-155 551.2 402 65.2
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 8.1e-153 544.7 467 58.7
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 5.8e-151 538.5 437 61.1
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.7e-150 537.0 515 53.6
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.9e-150 536.2 464 57.5
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 2.9e-150 536.2 505 54.5
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 3.8e-150 535.8 464 57.3
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.1e-149 534.3 510 55.3
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 6.6e-147 525.0 513 53.8
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 4.3e-146 522.3 476 54.6
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 6.9e-144 515.0 374 67.6
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.5e-143 513.8 481 55.9
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 5.8e-143 511.9 480 54.0
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 5.8e-143 511.9 470 54.0
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.2e-142 510.0 404 61.6
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 8.4e-142 508.1 404 60.9
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.7e-139 500.4 487 52.0
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 6.6e-139 498.4 464 55.2
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 5.6e-138 495.4 347 69.7
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.6e-137 492.7 467 54.0
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.7e-134 483.8 346 66.8
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 6.0e-132 475.3 440 53.6
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 1.3e-129 467.6 347 65.4
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 4.0e-128 462.6 347 64.0
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.5e-127 459.1 342 66.4
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 4.8e-105 386.0 283 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.3e-94 351.3 447 43.0
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 2.8e-89 333.6 247 67.6
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.5e-85 320.5 312 55.1
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 9.4e-85 318.5 401 45.1
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 5.2e-83 312.8 495 37.0
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 4.5e-79 299.7 212 70.3
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 2.9e-78 297.0 211 70.1
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 2.3e-75 287.3 417 41.0
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 2.8e-73 280.4 198 67.2
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 2.8e-73 280.4 527 35.7
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 6.0e-55 219.5 180 60.0
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 6.0e-55 219.5 331 40.5
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.2e-51 206.5 166 60.8
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.4e-50 203.8 463 30.5
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.2e-40 170.6 195 50.3
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 1.6e-39 168.3 148 58.1
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.0e-38 164.1 238 36.6
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 3.9e-38 163.7 338 34.3
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.1e-35 155.6 272 39.3
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 7.8e-31 139.4 112 63.4
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-30 138.3 113 60.2
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.0e-30 137.5 113 60.2
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 8.7e-22 109.4 111 50.5
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.8e-19 101.7 78 55.1
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 6.9e-19 99.8 75 62.7
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 3.5e-15 87.4 78 55.1
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.3e-12 79.0 41 80.5


User provided reference genes

Program Settings