Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.9e-103 379.4 228 100.0
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 1.2e-84 317.0 220 83.2
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 6.5e-83 311.2 220 80.5
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.8e-69 266.5 232 66.8
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 3.8e-67 258.8 232 65.5
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 3.8e-67 258.8 220 69.1
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.0e-64 250.8 238 63.4
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 8.2e-62 241.1 217 65.9
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-60 237.3 234 60.7
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 5.9e-60 235.0 234 65.4
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.9e-60 235.0 227 64.8
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 5.0e-59 231.9 220 61.4
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 6.5e-59 231.5 226 66.4
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 1.9e-58 229.9 233 65.2
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 2.5e-58 229.6 228 58.8
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.5e-58 229.6 231 57.6
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 5.5e-58 228.4 229 59.4
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 7.2e-58 228.0 234 59.4
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 2.1e-57 226.5 228 57.5
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 3.6e-57 225.7 231 57.1
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 4.7e-57 225.3 235 59.1
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 4.7e-57 225.3 231 56.7
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 4.7e-57 225.3 240 58.3
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.0e-56 224.2 239 58.6
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 2.3e-56 223.0 229 61.1
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 3.9e-56 222.2 241 57.7
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.5e-55 220.3 232 61.6
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.5e-55 220.3 231 64.1
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.7e-54 215.7 234 59.0
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 4.8e-54 215.3 228 58.3
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 6.3e-54 214.9 218 59.6
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.1e-53 214.2 222 58.1
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 4.1e-53 212.2 226 60.2
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 4.1e-53 212.2 226 60.2
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 7.0e-53 211.5 217 58.5
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.6e-52 210.3 234 59.0
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 2.0e-52 209.9 226 58.4
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.3e-51 207.2 233 57.1
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 1.5e-50 203.8 225 54.7
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 7.2e-50 201.4 235 53.6
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 2.7e-49 199.5 183 68.3
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 3.6e-49 199.1 235 53.2
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 4.7e-49 198.7 240 51.7
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 6.1e-49 198.4 237 64.6
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 6.1e-49 198.4 170 64.7
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 1.4e-48 197.2 238 51.3
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 1.4e-48 197.2 235 60.0
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 5.2e-48 195.3 246 50.0
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 5.2e-48 195.3 228 55.3
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 8.8e-48 194.5 229 54.1
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 7.5e-47 191.4 210 53.8
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 7.5e-47 191.4 236 50.0
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 9.8e-47 191.0 178 60.7
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 1.7e-46 190.3 251 50.2
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.7e-46 190.3 244 55.3
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.2e-46 189.9 232 60.3
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 2.8e-46 189.5 226 61.1
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 2.8e-46 189.5 251 49.4
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 2.8e-46 189.5 216 50.9
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 3.7e-46 189.1 233 51.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 8.3e-46 188.0 249 48.6
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 8.3e-46 188.0 229 54.1
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.8e-45 186.8 232 55.6
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 3.1e-45 186.0 224 51.8
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 5.4e-45 185.3 223 54.3
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 7.0e-45 184.9 221 52.5
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 7.0e-45 184.9 159 69.8
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.2e-44 184.1 216 56.5
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.6e-44 183.7 252 48.0
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.6e-44 183.7 252 48.0
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 1.6e-44 183.7 178 60.7
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.0e-44 183.3 226 56.2
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.7e-44 183.0 224 58.5
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 3.5e-44 182.6 254 48.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 7.7e-44 181.4 262 51.9
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 7.7e-44 181.4 262 51.9
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.0e-43 181.0 239 52.7
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 8.5e-43 177.9 177 57.1
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 8.5e-43 177.9 264 51.9
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 8.5e-43 177.9 264 51.9
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.1e-42 177.6 263 51.7
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 1.1e-42 177.6 240 52.5
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 5.5e-42 175.3 244 56.1
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 9.4e-42 174.5 250 49.2
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.6e-41 173.7 247 47.8
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-41 173.7 222 58.6
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.7e-41 172.9 162 61.1
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 3.0e-40 169.5 217 53.9
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 5.2e-40 168.7 185 60.0
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.7e-39 165.2 215 49.8
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 9.8e-39 164.5 239 46.9
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 3.7e-38 162.5 227 54.6
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 9.1e-37 157.9 183 53.6
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 9.1e-37 157.9 230 48.7
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.5e-36 156.0 219 47.0
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 5.9e-36 155.2 233 46.4
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 2.8e-33 146.4 249 47.0
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 4.7e-33 145.6 212 45.3
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 5.7e-31 138.7 230 40.9
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 8.3e-30 134.8 232 47.0
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 2.4e-29 133.3 189 47.1
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 2.4e-29 133.3 224 43.3
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.7e-27 127.1 120 67.5
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 4.0e-24 115.9 151 52.3
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 6.4e-22 108.6 184 40.2
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 2.4e-21 106.7 251 33.5
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 3.9e-19 99.4 177 51.4
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.8e-16 90.5 62 72.6
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 3.1e-16 89.7 54 81.5
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 4.4e-15 85.9 51 82.4
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 5.8e-15 85.5 100 50.0
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 7.8e-12 75.1 86 52.3
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.1e-10 71.2 149 44.3
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.1e-10 71.2 149 44.3
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.3e-10 69.7 80 58.8
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 2.8e-09 66.6 92 45.7
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 3.6e-09 66.2 105 45.7
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 8.1e-09 65.1 99 41.4
unitig_0.g1068 Utricularia gibba HOM05D006466 ORTHO05D008084 2.9e-06 56.6 42 57.1
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 6.4e-06 55.5 85 43.5
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 6.4e-06 55.5 56 51.8


User provided reference genes

Program Settings