Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.2e-220 769.6 399 100.0
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.4e-186 656.4 399 85.0
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.3e-184 649.8 405 84.2
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 6.7e-184 647.5 409 82.9
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.5e-183 646.4 399 84.2
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 1.6e-182 642.9 400 83.2
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 4.8e-182 641.3 403 81.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.1e-181 640.2 402 82.6
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.8e-181 639.4 399 83.5
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.2e-180 636.7 405 83.0
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 4.5e-180 634.8 401 82.8
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 7.6e-180 634.0 399 82.5
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.2e-179 632.5 401 82.3
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.2e-179 632.5 399 81.7
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.9e-179 631.3 400 81.2
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.4e-178 629.8 400 81.0
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.2e-178 628.6 400 81.0
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 4.2e-178 628.2 399 81.5
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.5e-178 627.9 399 81.2
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 2.1e-177 625.9 399 81.5
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.8e-176 622.9 401 79.8
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 8.7e-176 620.5 399 79.9
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-175 619.4 399 79.7
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.5e-175 619.0 399 79.7
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.4e-175 617.5 399 79.7
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 9.6e-175 617.1 399 80.5
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.8e-174 615.5 399 79.2
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 2.8e-174 615.5 399 79.2
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 4.8e-174 614.8 399 79.9
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 8.2e-174 614.0 399 78.4
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 8.2e-174 614.0 399 80.5
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-173 613.2 404 79.0
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.4e-173 612.5 399 78.7
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 2.6e-172 609.0 403 79.2
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 4.5e-172 608.2 399 77.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 7.6e-172 607.4 406 78.3
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 8.4e-171 604.0 402 78.9
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.2e-169 600.1 406 76.4
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.7e-169 599.0 400 77.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 5.1e-168 594.7 399 76.7
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.9e-167 592.8 388 79.4
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.3e-167 592.0 399 76.2
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 7.4e-167 590.9 398 75.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.6e-166 589.7 397 75.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 6.3e-166 587.8 409 75.3
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 8.2e-166 587.4 399 74.7
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.1e-165 587.0 399 74.7
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.4e-165 586.6 399 74.9
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.4e-165 586.6 399 74.7
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.8e-165 586.3 405 75.3
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.2e-164 583.6 389 75.6
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 3.4e-164 582.0 405 75.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 3.4e-164 582.0 399 76.9
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 5.9e-164 581.3 405 74.8
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 7.7e-164 580.9 399 75.7
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.2e-163 579.3 399 74.7
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 8.5e-163 577.4 340 85.3
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.4e-162 576.6 419 71.6
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.5e-162 575.9 407 74.4
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 4.2e-162 575.1 407 73.2
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.2e-161 573.5 408 73.5
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 2.1e-161 572.8 510 63.7
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 2.1e-161 572.8 399 73.4
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 3.6e-161 572.0 404 74.8
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.6e-161 571.6 390 75.9
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.0e-160 570.5 399 75.2
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.4e-160 570.1 405 72.3
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 2.3e-160 569.3 408 72.8
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 3.9e-160 568.5 405 74.6
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.1e-160 568.2 399 75.2
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 2.0e-159 566.2 409 73.3
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.5e-159 565.8 407 73.0
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 5.7e-159 564.7 402 74.1
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 9.7e-159 563.9 409 72.9
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.3e-158 563.5 399 71.4
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.2e-158 562.8 399 73.7
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 4.8e-158 561.6 356 81.7
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 6.3e-158 561.2 408 72.8
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 8.2e-158 560.8 408 73.0
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.8e-157 559.7 408 72.5
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 1.8e-157 559.7 391 73.4
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 9.1e-157 557.4 430 69.3
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 9.1e-157 557.4 364 78.8
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.5e-156 556.6 411 72.0
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 2.9e-155 552.4 402 72.9
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 3.8e-155 552.0 391 72.4
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.1e-154 550.4 400 70.8
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 9.4e-154 547.4 362 76.0
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.4e-151 538.5 409 69.9
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.4e-149 533.5 358 76.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.8e-149 533.1 354 76.6
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.0e-148 529.6 355 73.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.6e-148 529.3 399 69.9
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 1.0e-147 527.3 402 70.4
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 6.7e-144 514.6 389 71.2
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.1e-141 507.3 306 82.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.4e-141 506.9 399 66.2
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 2.0e-140 503.1 404 67.6
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 3.5e-140 502.3 284 87.3
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 8.8e-136 487.6 337 72.1
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 3.5e-132 475.7 348 68.4
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.6e-129 466.8 371 67.1
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.6e-121 439.1 450 56.2
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 8.3e-110 401.4 337 60.2
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.2e-79 301.2 337 53.4
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.5e-79 300.8 245 67.8
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.2e-76 291.2 263 61.6
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.6e-73 280.8 160 83.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 5.8e-71 272.3 206 67.0
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.9e-67 259.6 179 75.4
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 4.8e-65 252.7 203 61.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.8e-64 250.8 231 61.0
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.1e-58 231.5 260 53.1
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.8e-57 226.9 174 73.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 2.5e-53 213.8 230 53.0
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.3e-49 201.4 205 55.1
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-47 194.1 110 86.4
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 3.2e-45 186.8 110 83.6
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.0e-43 181.8 366 37.2
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.3e-41 174.9 146 67.8
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.4e-40 170.6 134 69.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 3.1e-40 170.2 412 32.3
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.1e-40 170.2 110 74.5
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.9e-40 169.1 100 81.0
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.2e-37 159.8 284 36.3
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 8.8e-35 152.1 275 34.9
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.4e-32 144.1 146 58.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-32 143.7 146 58.2
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 9.1e-24 115.5 261 33.7
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.2e-22 110.9 78 75.6
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.1e-20 104.4 211 31.8
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 4.7e-20 103.2 66 81.8
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.5e-18 98.2 83 65.1
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.0e-18 97.8 60 85.0
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.4e-16 90.9 51 88.2
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 3.1e-16 90.5 50 90.0
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.0e-16 89.4 130 40.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.6e-15 88.2 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.6e-15 88.2 80 63.8
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 2.0e-15 87.8 62 66.1
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 4.5e-15 86.7 51 76.5
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.5e-15 86.7 49 79.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.9e-15 86.3 53 84.9
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 7.7e-15 85.9 55 81.8
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.7e-14 84.7 52 84.6
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 8.5e-14 82.4 108 45.4
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 1.1e-13 82.0 277 27.4
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.5e-13 80.9 52 82.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 5.5e-13 79.7 85 51.8
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 9.5e-13 79.0 48 85.4
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 9.5e-13 79.0 48 85.4
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.0e-12 75.9 51 62.7
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.5e-10 71.6 40 90.0
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 3.4e-10 70.5 40 87.5


User provided reference genes

Program Settings