Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.2e-114 415.2 233 100.0
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.6e-84 315.1 233 78.5
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.6e-82 308.1 233 76.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.6e-81 306.6 237 78.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.7e-81 305.1 238 79.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.0e-79 299.7 237 75.1
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 4.4e-79 298.5 236 78.0
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 2.2e-78 296.2 237 76.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.1e-77 292.0 236 75.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 7.1e-77 291.2 255 72.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.2e-76 290.4 236 72.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-76 290.4 236 72.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.2e-76 290.4 237 74.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.6e-76 290.0 237 68.8
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 4.6e-76 288.5 237 70.5
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 4.6e-76 288.5 236 75.4
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 4.6e-76 288.5 236 75.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.0e-76 288.1 236 74.2
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.0e-75 287.3 238 72.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.0e-75 287.3 236 73.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.3e-75 286.2 239 74.1
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.3e-75 286.2 237 74.7
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.6e-73 280.0 240 72.5
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.8e-73 279.3 242 68.6
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.8e-73 279.3 237 72.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.8e-73 279.3 234 73.1
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 6.2e-73 278.1 168 91.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.4e-72 276.9 242 68.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.1e-72 275.8 237 70.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 8.9e-72 274.2 237 71.3
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.5e-71 273.5 183 85.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.6e-71 272.7 239 71.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 7.6e-71 271.2 238 66.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 7.6e-71 271.2 184 79.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 7.6e-71 271.2 266 66.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 9.9e-71 270.8 244 70.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.9e-70 269.2 232 72.0
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 4.9e-70 268.5 243 71.2
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 4.9e-70 268.5 235 71.9
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.9e-70 268.5 238 65.5
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 8.4e-70 267.7 237 70.5
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.4e-69 266.9 245 65.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.4e-69 266.9 237 66.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 3.2e-69 265.8 237 69.6
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 4.2e-69 265.4 237 70.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 5.4e-69 265.0 239 68.2
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.2e-68 263.8 237 69.6
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.7e-68 262.7 237 70.0
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.7e-68 262.7 239 68.2
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.7e-68 262.7 239 67.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.7e-68 262.7 239 67.8
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 3.5e-68 262.3 239 67.8
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.5e-68 262.3 236 69.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.0e-67 260.8 168 86.9
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.3e-67 260.4 239 67.4
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.3e-67 259.6 181 81.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.3e-67 259.6 239 67.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.3e-67 259.6 241 63.9
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.0e-67 259.2 251 61.0
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 3.0e-67 259.2 239 62.3
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 8.7e-67 257.7 236 67.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 8.7e-67 257.7 238 68.5
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.9e-66 256.5 240 67.9
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.9e-66 256.5 239 62.8
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 4.3e-66 255.4 236 68.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 7.3e-66 254.6 245 60.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 7.3e-66 254.6 230 62.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 9.6e-66 254.2 239 67.4
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.3e-65 253.8 240 62.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.8e-65 252.7 243 67.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.6e-65 252.3 239 64.9
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 3.6e-65 252.3 241 66.8
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 8.1e-65 251.1 235 65.5
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 8.1e-65 251.1 186 78.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.4e-64 250.4 239 66.1
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 2.4e-64 249.6 240 66.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 5.3e-64 248.4 253 66.4
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.2e-63 247.3 183 76.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.5e-63 245.4 241 60.2
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 4.5e-63 245.4 239 60.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.6e-63 244.6 239 61.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.9e-63 244.2 239 61.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 206 70.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 4.9e-62 241.9 187 71.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 240 66.2
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 6.4e-62 241.5 233 66.5
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-61 240.7 272 56.2
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.4e-61 240.4 176 72.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.4e-61 240.4 222 66.2
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 9.3e-61 237.7 184 72.3
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-60 236.9 231 65.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.6e-60 236.9 231 65.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.1e-59 231.9 196 65.8
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.5e-58 229.6 252 56.7
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.3e-57 227.3 187 71.1
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.7e-57 225.7 186 65.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.1e-56 224.2 202 66.3
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.4e-56 223.8 250 56.0
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.9e-54 215.3 218 59.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.4e-53 213.8 183 68.9
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.5e-52 209.1 172 73.8
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.1e-51 205.3 168 66.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 6.7e-51 204.9 310 46.8
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-50 204.1 236 60.2
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.1e-48 197.6 227 53.3
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 6.5e-46 188.3 192 55.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.1e-45 187.6 190 60.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.1e-44 183.3 173 59.0
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.7e-43 178.3 125 83.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.8e-41 172.9 253 51.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 7.6e-39 164.9 140 60.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.4e-37 160.6 128 64.1
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.2e-37 159.5 169 53.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.6e-36 155.6 100 81.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-34 150.6 100 79.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.7e-34 148.7 100 78.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.1e-32 142.5 93 78.5
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.8e-27 127.1 97 81.4
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.6e-26 123.2 221 43.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.3e-26 122.9 99 64.6
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.7e-26 122.1 73 82.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.7e-25 120.6 101 58.4
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.7e-25 119.4 123 49.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.1e-24 117.9 147 46.9
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.8e-24 117.1 211 39.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 5.9e-23 112.1 257 34.2
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 7.7e-23 111.7 79 65.8
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.2e-22 110.2 256 34.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.1e-21 107.8 153 45.1
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.4e-21 107.5 255 34.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.5e-21 106.7 255 34.1
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.4e-18 95.9 82 63.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.2e-17 93.6 162 37.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.0e-14 84.7 133 38.3
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.0e-10 70.5 122 39.3
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.8e-09 66.6 133 34.6
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.8e-09 65.9 51 66.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 4.8e-09 65.9 53 86.8
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 3.5e-07 59.7 191 30.4
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 5.0e-06 55.8 245 28.2


User provided reference genes

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