Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.0e-54 214.2 107 100.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.3e-41 172.9 107 82.2
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.4e-32 141.0 106 74.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.1e-31 139.0 105 74.3
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 5.6e-29 131.0 106 71.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.6e-28 129.4 105 70.5
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.3e-27 124.4 104 66.3
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.9e-27 124.0 109 66.1
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.2e-26 123.2 104 66.3
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 7.6e-26 120.6 102 65.7
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-25 118.6 104 64.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.4e-25 117.1 102 60.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-24 115.5 108 62.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.2e-24 115.2 105 63.8
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.2e-24 115.2 108 61.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.2e-24 114.8 104 62.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.6e-23 112.8 91 65.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.1e-23 112.5 108 60.2
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.7e-23 112.1 108 61.1
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 6.0e-23 110.9 106 61.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.0e-22 110.2 105 61.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-22 109.8 101 61.4
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 6.7e-22 107.5 105 58.1
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.5e-21 106.3 109 55.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.5e-21 105.5 78 67.9
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.3e-21 104.8 99 62.6
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.4e-21 104.0 109 58.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.1e-20 102.4 78 65.4
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 4.8e-20 101.3 109 58.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 8.1e-20 100.5 79 67.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-19 99.8 95 57.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.8e-19 99.4 94 55.3
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 5.3e-19 97.8 95 54.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.3e-19 97.8 101 56.4
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.0e-18 95.9 87 63.2
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.6e-18 95.5 91 61.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.4e-18 95.1 101 55.4
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.6e-18 94.0 105 52.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-17 92.4 110 52.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.9e-17 92.0 88 59.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 2.9e-17 92.0 90 58.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.8e-17 91.7 105 51.4
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 5.5e-16 87.8 67 67.2
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 9.3e-16 87.0 82 57.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-15 86.7 93 57.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.6e-15 86.3 97 53.6
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.1e-15 85.9 91 52.7
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.6e-15 84.7 90 54.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 6.0e-15 84.3 89 56.2
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.0e-15 84.3 90 57.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 7.9e-15 84.0 90 57.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.3e-14 83.2 95 56.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.3e-14 82.4 104 50.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.3e-14 82.4 88 56.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.0e-14 82.0 111 50.5
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.0e-14 82.0 90 53.3
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.9e-14 81.6 103 52.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-13 79.3 103 51.5
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.3e-13 78.2 93 52.7
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.3e-13 78.2 98 54.1
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 7.4e-13 77.4 96 49.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 7.4e-13 77.4 95 49.5
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 7.4e-13 77.4 90 56.7
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.6e-12 76.3 74 55.4
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.1e-12 75.9 50 74.0
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.7e-12 75.1 81 56.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.1e-11 73.6 100 47.0
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 3.1e-11 72.0 41 85.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.1e-11 72.0 97 47.4
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.0e-11 71.6 63 58.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 5.3e-11 71.2 89 51.7
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.9e-11 70.9 99 48.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 6.9e-11 70.9 98 45.9
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-10 69.7 87 47.1
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.5e-10 69.7 88 45.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-10 69.7 95 48.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.5e-10 69.7 84 57.1
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.6e-10 68.9 65 60.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.4e-10 68.6 94 47.9
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.4e-10 68.6 92 47.8
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 4.5e-10 68.2 95 47.4
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.5e-10 68.2 95 47.4
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.5e-10 68.2 95 47.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 7.6e-10 67.4 62 58.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.6e-10 67.4 99 46.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 88 44.3
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 88 44.3
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 89 47.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 61 57.4
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-09 67.0 88 44.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-09 67.0 61 57.4
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.0e-09 67.0 61 57.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.0e-09 67.0 77 51.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.0e-09 67.0 84 48.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.3e-09 66.6 99 44.4
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.3e-09 66.6 85 49.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-09 66.6 82 50.0
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-09 66.2 64 59.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-09 66.2 88 43.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.7e-09 66.2 88 43.2
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 44 72.7
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.7e-09 66.2 90 47.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.2e-09 65.9 88 45.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-09 65.9 94 46.8
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.9e-09 65.5 45 68.9
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.9e-09 65.5 99 44.4
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.8e-09 65.1 94 46.8
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-09 65.1 88 43.2
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.8e-09 65.1 45 75.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 4.9e-09 64.7 92 46.7
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 4.9e-09 64.7 61 55.7
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 4.9e-09 64.7 61 55.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.9e-09 64.7 44 70.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.9e-09 64.7 72 47.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.1e-08 63.5 83 49.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-08 63.5 88 43.2
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-08 63.5 93 44.1
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.1e-08 63.5 81 50.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.1e-08 63.5 86 47.7
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 95 45.3
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 54 55.6
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.1e-08 63.5 105 41.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.4e-08 63.2 88 44.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 94 45.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-08 63.2 61 54.1
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-08 63.2 61 54.1
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-08 63.2 61 54.1
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.9e-08 62.8 83 45.8
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 78 52.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.9e-08 62.8 44 68.2
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 72 47.2
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.9e-08 62.8 102 45.1
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 88 42.0
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.5e-08 62.4 78 47.4
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.5e-08 62.4 46 65.2
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.2e-08 62.0 49 59.2
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 45 64.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.2e-08 61.6 62 51.6
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.2e-08 61.6 63 57.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 4.2e-08 61.6 88 45.5
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 4.2e-08 61.6 80 47.5
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.2e-08 61.6 99 46.5
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 5.5e-08 61.2 94 40.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 7.1e-08 60.8 90 46.7
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 7.1e-08 60.8 100 44.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 9.3e-08 60.5 82 45.1
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.6e-07 59.7 77 48.1
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 101 40.6
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.7e-07 58.9 94 43.6
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 4.6e-07 58.2 44 61.4
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 6.0e-07 57.8 90 41.1
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 6.0e-07 57.8 90 40.0
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.0e-06 57.0 77 46.8
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.0e-06 57.0 40 70.0
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.0e-06 57.0 40 70.0
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.3e-06 56.6 43 67.4
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.3e-06 56.6 71 52.1
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 1.3e-06 56.6 45 60.0
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.3e-06 55.8 93 41.9
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 2.3e-06 55.8 44 61.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.3e-06 55.8 54 53.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.3e-06 55.8 44 61.4
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 2.3e-06 55.8 44 61.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.0e-06 55.5 43 62.8
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.0e-06 55.5 43 62.8
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-06 54.7 97 37.1
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 8.7e-06 53.9 40 70.0
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 8.7e-06 53.9 43 60.5
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 8.7e-06 53.9 56 51.8


User provided reference genes

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