Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 8.5e-171 603.6 309 100.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.1e-128 463.8 303 79.2
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 3.2e-125 452.2 300 77.0
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.8e-120 436.4 301 75.1
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 3.1e-120 435.6 305 74.1
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 3.1e-120 435.6 319 72.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 6.9e-120 434.5 301 74.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.7e-118 429.9 270 80.0
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.8e-118 428.7 281 76.2
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 6.4e-118 427.9 299 73.9
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.4e-117 426.8 298 72.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.9e-117 426.4 267 78.3
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.9e-117 426.4 300 73.0
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.9e-117 426.4 290 75.5
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.2e-117 425.6 290 73.8
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 5.4e-117 424.9 290 75.9
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 5.4e-117 424.9 290 75.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.1e-116 422.9 276 76.1
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 4.6e-116 421.8 295 75.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 6.0e-116 421.4 289 73.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 7.9e-116 421.0 267 77.5
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 7.9e-116 421.0 276 76.1
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.3e-115 420.2 315 70.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.3e-115 420.2 294 72.8
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.3e-115 419.5 275 75.6
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 2.3e-115 419.5 276 75.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 6.6e-115 417.9 267 77.2
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.9e-114 416.4 273 75.8
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.9e-114 416.4 278 75.2
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 3.3e-114 415.6 275 74.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.3e-114 415.6 300 71.7
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 3.3e-114 415.6 295 70.8
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 5.6e-114 414.8 280 74.3
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 5.6e-114 414.8 275 74.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 9.6e-114 414.1 296 72.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.3e-113 413.7 294 71.8
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.6e-113 413.3 303 71.3
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 2.1e-113 412.9 279 73.8
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 4.8e-113 411.8 286 74.1
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 8.1e-113 411.0 278 74.8
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.4e-112 409.5 276 74.3
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.1e-112 409.1 291 72.2
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.1e-112 409.1 279 74.2
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.0e-112 408.7 294 71.4
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 5.3e-112 408.3 275 73.8
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 6.9e-112 407.9 291 71.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.2e-111 407.1 285 72.6
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.2e-111 407.1 267 74.5
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.5e-111 406.8 281 73.0
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.0e-111 406.4 259 78.4
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 3.4e-111 405.6 269 75.5
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.9e-110 402.5 323 66.6
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.9e-110 401.7 282 70.6
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.9e-110 401.7 292 68.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.9e-110 401.7 272 72.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 6.4e-110 401.4 272 72.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 8.4e-110 401.0 280 73.9
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.9e-109 399.8 266 74.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.9e-109 399.8 285 70.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.9e-109 399.8 267 74.5
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.4e-109 399.4 286 68.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 2.4e-109 399.4 259 76.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.2e-109 399.1 289 68.2
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.2e-109 398.7 322 66.5
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.1e-108 396.4 289 69.9
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 6.0e-108 394.8 297 68.0
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.0e-107 394.0 269 72.9
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.3e-107 393.7 291 69.8
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.9e-107 392.1 288 70.8
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.9e-107 392.1 288 70.8
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 5.1e-107 391.7 248 75.4
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.9e-106 389.8 266 72.9
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-106 389.0 299 68.2
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.3e-106 389.0 299 68.2
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.3e-106 389.0 284 67.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 4.3e-106 388.7 300 68.0
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 7.4e-106 387.9 277 71.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.7e-105 385.6 318 63.2
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 4.8e-105 385.2 334 62.6
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.4e-104 382.9 350 59.1
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 3.1e-104 382.5 272 69.1
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 5.3e-104 381.7 298 68.5
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 6.9e-104 381.3 238 80.7
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.5e-103 380.2 232 79.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.6e-103 379.4 234 79.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.0e-102 377.5 306 66.7
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.4e-101 373.6 234 79.1
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.9e-101 373.2 286 66.4
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.2e-101 372.1 267 68.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.2e-100 370.5 288 67.7
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 6.0e-100 368.2 399 53.6
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-99 367.5 240 75.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 3.9e-99 365.5 232 76.7
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.5e-98 363.6 268 67.2
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.5e-92 342.4 262 67.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.5e-90 336.3 264 63.6
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.4e-90 334.7 297 61.6
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 6.3e-89 331.6 197 80.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 5.3e-88 328.6 262 61.1
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.5e-87 327.0 262 61.8
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-87 325.9 237 71.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.7e-86 323.6 263 65.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.9e-78 296.2 242 68.6
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 1.6e-76 290.4 199 73.4
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 2.1e-76 290.0 221 68.3
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 2.4e-72 276.6 221 66.5
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 7.0e-72 275.0 197 64.5
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.0e-70 268.9 202 67.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.7e-65 253.8 197 67.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 5.3e-64 248.8 193 67.4
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.7e-62 243.8 191 70.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-62 242.3 157 77.1
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.4e-59 234.2 199 58.8
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.0e-54 215.7 129 81.4
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-53 214.2 172 66.9
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.6e-52 210.7 172 65.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-49 199.9 229 52.0
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 157 65.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-45 187.2 157 65.0
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-45 185.7 156 65.4
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-45 184.9 157 65.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-44 183.3 173 60.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.6e-44 183.0 132 67.4
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-44 183.0 157 65.6
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-43 181.0 157 63.7
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.9e-43 178.3 156 63.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-42 175.3 158 62.0
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 9.2e-40 168.3 108 80.6
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-39 167.9 177 57.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 3.5e-39 166.4 100 82.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-38 164.9 144 63.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-37 159.5 157 59.9
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 5.6e-37 159.1 99 79.8
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-33 146.7 94 80.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 55.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 55.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-33 145.6 125 63.2
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-33 145.6 123 64.2
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-32 142.9 95 77.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.2e-31 141.4 229 39.3
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.5e-29 131.7 88 71.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-26 124.4 156 50.6
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.8e-26 122.5 85 71.8
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 8.3e-25 118.6 109 59.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-22 110.9 70 81.4
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-19 100.5 159 41.5
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-16 90.5 101 51.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.2e-16 90.1 56 75.0
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-15 85.5 89 53.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-14 85.1 57 70.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.9e-09 67.0 129 36.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.2e-07 61.6 111 36.0
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 3.5e-07 60.1 148 36.5


User provided reference genes

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