Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 4.8e-206 721.1 407 100.0
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 9.0e-128 461.1 417 63.1
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.4e-125 453.8 404 65.1
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.7e-124 449.5 406 62.8
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 4.6e-124 448.7 410 61.7
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 7.9e-124 448.0 410 63.4
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 3.0e-123 446.0 406 63.8
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.1e-122 444.1 444 58.6
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 3.3e-122 442.6 409 61.4
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.6e-121 440.3 410 62.2
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 4.8e-121 438.7 410 60.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.1e-120 435.6 407 61.7
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 4.1e-120 435.6 411 62.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 5.3e-120 435.3 412 60.9
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.0e-118 431.0 410 60.2
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 3.8e-118 429.1 407 59.2
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.2e-117 426.0 407 62.7
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 3.2e-117 426.0 408 59.1
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 7.2e-117 424.9 403 61.3
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.2e-117 424.9 446 55.2
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.7e-116 422.9 406 62.1
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 3.6e-116 422.5 413 60.8
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 5.1e-115 418.7 408 59.6
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 6.7e-115 418.3 408 59.6
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 4.3e-114 415.6 403 60.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 4.3e-114 415.6 403 60.5
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 4.3e-114 415.6 409 58.7
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.8e-112 410.2 416 57.5
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 4.1e-112 409.1 404 58.2
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.3e-112 408.7 411 58.9
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 5.3e-112 408.7 409 58.7
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.2e-111 407.5 409 56.7
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 3.4e-111 406.0 408 57.8
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 7.7e-111 404.8 416 57.5
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 2.9e-110 402.9 404 58.7
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 3.8e-110 402.5 403 58.3
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.5e-110 401.7 414 58.9
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.4e-109 400.6 403 57.8
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 4.2e-109 399.1 407 57.5
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.5e-109 398.7 405 57.0
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 5.5e-109 398.7 408 57.1
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 7.2e-109 398.3 409 56.5
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.6e-108 397.1 411 57.7
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 3.6e-108 396.0 404 58.7
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 4.7e-108 395.6 411 56.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.8e-107 393.7 409 57.0
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.1e-107 392.1 402 57.2
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.1e-107 392.1 403 56.8
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 5.1e-107 392.1 404 55.0
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 6.7e-107 391.7 404 57.2
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-106 391.0 402 57.0
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.5e-106 390.6 407 55.8
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.0e-106 390.2 402 56.7
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.2e-105 386.7 406 55.7
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 3.7e-105 386.0 403 55.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 4.8e-105 385.6 414 54.8
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 4.8e-105 385.6 433 53.1
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.1e-104 384.4 415 52.8
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.1e-104 384.4 404 56.7
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 2.4e-104 383.3 411 58.2
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 5.3e-104 382.1 413 54.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.5e-103 380.6 415 52.5
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 4.5e-103 379.0 409 56.0
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-102 377.9 406 55.7
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.7e-102 377.1 410 54.6
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.4e-101 374.0 414 54.6
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 3.2e-101 372.9 410 54.1
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.1e-100 370.2 404 55.0
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.7e-100 369.8 406 57.1
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.9e-99 365.9 405 53.6
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 8.8e-99 364.8 419 52.7
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 2.6e-98 363.2 395 56.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.3e-98 362.8 409 53.8
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 7.4e-98 361.7 410 53.7
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 7.4e-98 361.7 430 51.6
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.7e-97 360.5 402 52.5
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 6.3e-97 358.6 407 53.3
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.1e-96 357.8 409 53.1
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 5.3e-96 355.5 415 58.1
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 7.0e-96 355.1 408 51.7
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.0e-94 351.3 402 53.7
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 3.8e-94 349.4 420 50.5
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.8e-94 349.4 407 51.6
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.9e-93 347.1 414 54.8
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 2.5e-93 346.7 411 56.4
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 9.4e-93 344.7 409 51.1
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.2e-92 344.4 415 54.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.1e-92 343.6 420 57.1
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.1e-92 343.6 410 51.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 3.6e-92 342.8 415 56.6
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 6.1e-92 342.0 404 55.9
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 1.8e-91 340.5 411 49.6
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 4.0e-91 339.3 416 50.2
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 5.2e-91 339.0 413 51.6
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 2.6e-90 336.7 389 52.2
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.3e-90 336.3 391 59.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.3e-90 336.3 420 50.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 4.4e-90 335.9 421 53.9
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 5.7e-90 335.5 411 49.6
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 5.7e-90 335.5 419 56.6
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.3e-89 334.3 419 53.7
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.1e-88 331.3 422 55.7
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 2.4e-88 330.1 412 53.6
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 7.7e-87 325.1 412 49.0
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.2e-84 317.8 406 51.2
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.0e-83 314.7 358 52.8
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 8.8e-83 311.6 417 49.4
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.1e-80 303.1 404 49.5
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 3.5e-79 299.7 438 44.1
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.3e-77 293.1 403 48.6
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.6e-76 290.8 276 60.1
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 3.7e-73 279.6 362 50.8
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.9e-56 224.2 294 50.0
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 4.4e-50 203.0 408 37.7
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.7e-49 199.9 481 33.5
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 7.1e-48 195.7 284 54.6
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 9.2e-48 195.3 428 37.1
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 3.3e-45 186.8 254 48.0
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 3.3e-45 186.8 254 48.0
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 3.3e-45 186.8 254 48.0
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 5.2e-43 179.5 144 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.3e-41 174.9 555 29.7
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 7.8e-39 165.6 144 63.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 9.0e-35 152.1 423 33.8
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.9e-32 144.4 151 55.6
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.1e-31 141.0 414 30.9
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 5.1e-30 136.3 204 45.6
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.1e-27 127.1 218 41.3
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 4.2e-24 116.7 317 33.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 7.6e-18 95.9 375 27.7
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 7.6e-18 95.9 375 27.7
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 4.9e-17 93.2 91 61.5
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 4.6e-15 86.7 202 39.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 6.9e-11 72.8 45 75.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 7.1e-08 62.8 69 47.8


User provided reference genes

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