Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 9.1e-295 1016.1 507 100.0
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.1e-231 806.6 513 77.8
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 3.2e-231 805.1 508 78.3
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.5e-230 801.6 507 77.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 4.6e-230 801.2 517 77.2
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 2.3e-229 798.9 505 76.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 3.0e-229 798.5 515 77.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 6.6e-229 797.3 508 77.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.9e-228 795.8 506 76.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.5e-228 795.4 518 77.4
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.3e-228 795.0 506 76.7
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 7.3e-228 793.9 506 76.5
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-227 793.1 510 77.1
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 6.2e-227 790.8 507 75.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 3.1e-226 788.5 510 77.6
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 8.9e-226 786.9 514 75.9
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.5e-225 786.2 505 75.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 2.4e-223 778.9 507 75.7
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.2e-223 778.1 505 74.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 9.2e-223 776.9 508 74.8
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.6e-222 776.2 513 74.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.5e-222 775.0 519 73.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 4.6e-222 774.6 509 73.3
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.7e-221 772.7 514 74.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.7e-221 772.7 503 75.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 6.6e-221 770.8 508 73.4
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.1e-219 765.8 515 72.8
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 4.7e-219 764.6 508 73.4
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.4e-218 763.1 564 68.3
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-218 763.1 508 74.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 3.1e-218 761.9 507 74.4
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.4e-217 758.4 509 72.1
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.4e-217 758.4 519 71.9
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 9.9e-217 756.9 510 73.5
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 9.9e-217 756.9 507 72.6
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.7e-216 756.1 516 74.4
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 2.2e-216 755.7 508 73.0
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.9e-216 754.6 508 73.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 8.4e-216 753.8 526 71.5
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 8.4e-216 753.8 506 73.5
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.4e-215 751.1 508 73.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 9.3e-215 750.4 508 73.2
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 2.1e-214 749.2 513 72.5
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.5e-214 748.4 508 72.6
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 5.1e-213 744.6 506 73.1
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.5e-212 742.3 508 71.7
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 9.6e-212 740.3 516 71.3
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 8.1e-211 737.3 507 73.2
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.8e-210 736.1 490 73.3
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.3e-208 729.9 507 69.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 6.4e-208 727.6 507 70.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 6.0e-206 721.1 507 68.8
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.5e-204 715.7 507 70.4
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.5e-204 715.7 521 68.9
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 9.6e-204 713.8 508 70.7
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.3e-203 713.4 592 63.0
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.1e-203 712.6 521 67.2
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.4e-202 709.1 518 67.6
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 3.1e-202 708.8 507 68.2
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 9.3e-199 697.2 511 66.5
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.3e-197 692.6 509 68.6
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 8.4e-192 674.1 539 62.5
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 7.9e-190 667.5 532 64.7
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.3e-189 666.8 500 67.0
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.0e-189 665.6 511 66.1
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.0e-189 665.6 514 65.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.5e-188 663.3 526 63.3
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.3e-187 660.2 516 63.4
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.5e-185 653.3 395 81.5
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 7.7e-185 651.0 464 71.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.3e-184 650.2 518 64.1
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.8e-184 648.7 457 71.6
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.5e-183 646.0 539 61.4
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.6e-182 643.3 561 60.4
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 3.6e-182 642.1 514 60.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 3.9e-181 638.6 517 62.3
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.8e-181 637.5 534 60.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.3e-180 635.2 522 61.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.3e-179 633.6 517 62.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.3e-179 633.6 517 62.7
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.3e-179 633.6 517 62.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.2e-179 632.9 556 61.7
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.8e-179 632.5 517 62.5
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 2.8e-179 632.5 517 62.5
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.2e-175 618.6 468 68.2
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 9.1e-170 600.9 505 60.8
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.7e-163 580.1 364 77.5
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.3e-160 570.5 403 71.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.2e-156 557.4 506 57.7
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 5.0e-152 542.0 354 74.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.3e-136 490.7 381 66.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 9.5e-127 458.0 274 81.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-125 454.5 467 55.5
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 4.4e-124 449.1 510 51.0
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.7e-115 419.5 547 45.0
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 9.2e-114 414.8 530 44.2
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.1e-109 401.4 491 47.5
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.5e-108 397.5 511 42.9
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.6e-105 387.5 255 72.9
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 4.0e-101 372.9 255 72.5
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.5e-89 333.2 559 35.2
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.3e-86 324.7 261 61.7
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.3e-83 314.7 463 44.3
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 2.5e-82 310.5 195 77.9
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.5e-82 310.5 234 64.5
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-81 306.6 203 72.4
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.9e-77 292.4 222 68.9
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.8e-67 260.0 259 46.3
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 5.5e-66 256.1 239 54.0
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.2e-60 238.4 221 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.4e-60 236.9 240 50.0
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 9.4e-58 228.8 486 32.3
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 2.7e-49 200.7 255 48.2
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 8.8e-48 195.7 173 56.6
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.1e-45 188.7 147 61.2
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 5.5e-42 176.4 493 30.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.1e-41 174.5 185 48.6
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 2.3e-40 171.0 265 43.0
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.0e-35 153.3 506 27.9
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.8e-30 137.5 82 78.0
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.1e-29 135.6 106 63.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.6e-27 126.3 115 54.8
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.3e-22 112.1 126 52.4
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.9e-22 110.2 98 59.2
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 6.4e-22 109.8 121 49.6
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.1e-21 109.0 182 37.4
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.6e-20 105.1 182 41.2
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 4.9e-14 83.6 52 59.6
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-12 77.4 90 48.9
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 4.4e-07 60.5 71 52.1
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 1.7e-06 58.5 88 42.0
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.9e-06 57.0 45 60.0


User provided reference genes

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