Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G050733 Manihot esculenta HOM05D001398 ORTHO05D250925 1.8e-40 168.7 78 100.0
Manes.18G128104 Manihot esculenta HOM05D001398 ORTHO05D249570 5.4e-21 104.0 50 94.0
Manes.16G106300 Manihot esculenta HOM05D001398 ORTHO05D001467 5.0e-11 70.9 32 93.8
Manes.03G204450 Manihot esculenta HOM05D001398 ORTHO05D251076 8.6e-11 70.1 31 96.8
Duzib187G0051 Durio zibethinus HOM05D001398 ORTHO05D001467 1.6e-09 65.9 33 78.8
Gohir.D06G068100 Gossypium hirsutum HOM05D001398 ORTHO05D001467 1.6e-09 65.9 33 78.8
Gorai.010G079600 Gossypium raimondii HOM05D001398 ORTHO05D001467 1.6e-09 65.9 33 78.8
COL.COLO4_18267 Corchorus olitorius HOM05D001398 ORTHO05D001467 2.8e-09 65.1 33 78.8
Gohir.A06G069500 Gossypium hirsutum HOM05D001398 ORTHO05D001467 1.4e-08 62.8 33 75.8
Ciclev10007247m.g Citrus clementina HOM05D001398 ORTHO05D001467 4.0e-08 61.2 33 72.7
Sc08g0008160 Simmondsia chinensis HOM05D001398 ORTHO05D001467 5.2e-08 60.8 36 69.4
Cpa.g.sc78.48 Carica papaya HOM05D001398 ORTHO05D001467 6.8e-08 60.5 33 75.8
Thecc.09G096700 Theobroma cacao HOM05D001398 ORTHO05D001467 6.8e-08 60.5 33 72.7
Actinidia29897 Actinidia chinensis HOM05D001398 ORTHO05D001467 8.9e-08 60.1 34 73.5
Manes.16G076600 Manihot esculenta HOM05D001398 ORTHO05D001467 8.9e-08 60.1 32 71.9
RcHm_v2.0_Chr2g0092351 Rosa chinensis HOM05D001398 ORTHO05D001467 8.9e-08 60.1 32 75.0
vmacro06263 Vaccinium macrocarpon HOM05D001398 ORTHO05D001467 8.9e-08 60.1 48 50.0
CiPaw.03G220900 Carya illinoinensis HOM05D001398 ORTHO05D001467 1.2e-07 59.7 34 73.5
MD15G1200900 Malus domestica HOM05D001398 ORTHO05D001467 1.2e-07 59.7 33 72.7
MD02G1069200 Malus domestica HOM05D001398 ORTHO05D001467 1.5e-07 59.3 32 75.0
Cc06_g10810 Coffea canephora HOM05D001398 ORTHO05D001467 2.0e-07 58.9 34 70.6
Atru.chr7.1510 Acer truncatum HOM05D001398 ORTHO05D001467 2.6e-07 58.5 33 72.7
Potri.006G234500 Populus trichocarpa HOM05D001398 ORTHO05D001467 2.6e-07 58.5 32 75.0
Sabra06G0182900 Salix brachista HOM05D001398 ORTHO05D001467 2.6e-07 58.5 32 75.0
Sabra18G0054700 Salix brachista HOM05D001398 ORTHO05D001467 2.6e-07 58.5 34 70.6
Oeu038832.1 Olea europaea HOM05D001398 ORTHO05D001467 4.4e-07 57.8 33 69.7
PSO063G3976 Papaver somniferum HOM05D001398 ORTHO05D001467 4.4e-07 57.8 32 75.0
Potri.018G058300 Populus trichocarpa HOM05D001398 ORTHO05D001467 4.4e-07 57.8 32 71.9
Glyma.04G087300 Glycine max HOM05D001398 ORTHO05D001467 5.8e-07 57.4 36 66.7
Glyma.06G089000 Glycine max HOM05D001398 ORTHO05D001467 5.8e-07 57.4 36 66.7
Eucgr.C03702 Eucalyptus grandis HOM05D001398 ORTHO05D001467 7.5e-07 57.0 32 68.8
Lj7C669G9 Lonicera japonica HOM05D001398 ORTHO05D001467 7.5e-07 57.0 54 50.0
Cfa003149 Carpinus fangiana HOM05D001398 ORTHO05D001467 9.8e-07 56.6 32 71.9
COL.COLO4_21012 Corchorus olitorius HOM05D001398 ORTHO05D001467 9.8e-07 56.6 33 69.7
Haze_25854 Corylus avellana HOM05D001398 ORTHO05D001467 9.8e-07 56.6 32 71.9
Rhsim03G0235500 Rhododendron simsii HOM05D001398 ORTHO05D001467 9.8e-07 56.6 33 69.7
Manes.03G057400 Manihot esculenta HOM05D001398 ORTHO05D001467 1.3e-06 56.2 32 65.6
Prupe.7G216400 Prunus persica HOM05D001398 ORTHO05D001467 1.3e-06 56.2 32 68.8
QL02p040383 Quercus lobata HOM05D001398 ORTHO05D001467 1.3e-06 56.2 32 71.9
Lalb_Chr08g0242861 Lupinus albus HOM05D001398 ORTHO05D001467 1.7e-06 55.8 32 71.9
THA.LOC104799183 Tarenaya hassleriana HOM05D001398 ORTHO05D001467 1.7e-06 55.8 33 66.7
CSS0003235 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 2.2e-06 55.5 33 69.7
CSS0037761 Camellia sinensis var. sinensis HOM05D001398 ORTHO05D001467 2.2e-06 55.5 33 69.7
Migut.J01077 Erythranthe guttata HOM05D001398 ORTHO05D001467 2.2e-06 55.5 34 61.8
vmacro06265 Vaccinium macrocarpon HOM05D001398 ORTHO05D001467 2.2e-06 55.5 34 64.7
Dinv42275 Davidia involucrata HOM05D001398 ORTHO05D001467 2.9e-06 55.1 34 64.7
ECA234G1144 Erigeron canadensis HOM05D001398 ORTHO05D001467 2.9e-06 55.1 34 67.6
MBI04_g34115_MAGBIO Magnolia biondii HOM05D001398 ORTHO05D001467 2.9e-06 55.1 36 61.1
Nn6g35364 Nelumbo nucifera HOM05D001398 ORTHO05D001467 2.9e-06 55.1 32 71.9
PSO832G0273 Papaver somniferum HOM05D001398 ORTHO05D001467 2.9e-06 55.1 32 68.8
Hund26303 Selenicereus undatus HOM05D001398 ORTHO05D001467 2.9e-06 55.1 34 61.8
Zm00001eb121520 Zea mays HOM05D001398 ORTHO05D001467 2.9e-06 55.1 32 68.8
Zm00001eb337240 Zea mays HOM05D001398 ORTHO05D001467 2.9e-06 55.1 32 68.8
arahy.Tifrunner.gnm1.ann1.SU7RHA Arachis hypogaea HOM05D001398 ORTHO05D001467 3.7e-06 54.7 32 71.9
arahy.Tifrunner.gnm1.ann1.Z6S83C Arachis hypogaea HOM05D001398 ORTHO05D001467 3.7e-06 54.7 32 71.9
MSTRG.11680 Avicennia marina HOM05D001398 ORTHO05D001467 3.7e-06 54.7 32 68.8
Dinv27948 Davidia involucrata HOM05D001398 ORTHO05D001467 3.7e-06 54.7 33 69.7
Nn8g39001 Nelumbo nucifera HOM05D001398 ORTHO05D001467 3.7e-06 54.7 33 66.7
TPR.G12472 Trifolium pratense HOM05D001398 ORTHO05D001467 3.7e-06 54.7 32 68.8
TAR626G0298 Trochodendron aralioides HOM05D001398 ORTHO05D001467 3.7e-06 54.7 32 68.8
Actinidia30295 Actinidia chinensis HOM05D001398 ORTHO05D001467 4.9e-06 54.3 33 69.7
Lalb_Chr11g0064611 Lupinus albus HOM05D001398 ORTHO05D001467 4.9e-06 54.3 32 71.9
Lalb_Chr23g0269781 Lupinus albus HOM05D001398 ORTHO05D001467 4.9e-06 54.3 36 61.1
Medtr8g102160 Medicago truncatula HOM05D001398 ORTHO05D001467 4.9e-06 54.3 32 68.8
Phvul.009G112800 Phaseolus vulgaris HOM05D001398 ORTHO05D001467 4.9e-06 54.3 33 66.7
Psat7g018600 Pisum sativum HOM05D001398 ORTHO05D001467 4.9e-06 54.3 32 68.8
SalBow6G1810 Salvia bowleyana HOM05D001398 ORTHO05D001467 4.9e-06 54.3 34 61.8
Ah.14g083480 Amaranthus hybridus HOM05D001398 ORTHO05D001467 6.4e-06 53.9 34 61.8
CiPaw.07G201300 Carya illinoinensis HOM05D001398 ORTHO05D001467 6.4e-06 53.9 33 66.7
Sed0002808 Sechium edule HOM05D001398 ORTHO05D001467 6.4e-06 53.9 32 68.8


User provided reference genes

Program Settings