Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G049405 Manihot esculenta HOM05D001177 ORTHO05D007091 1.5e-89 332.8 170 100.0
Manes.01G014100 Manihot esculenta HOM05D001177 ORTHO05D007091 7.7e-81 303.9 176 90.3
Manes.S095224 Manihot esculenta HOM05D001177 ORTHO05D007091 3.5e-65 251.9 139 93.5
Sabra16G0217700 Salix brachista HOM05D001177 ORTHO05D007091 5.0e-56 221.5 176 64.8
Potri.001G336832 Populus trichocarpa HOM05D001177 ORTHO05D007091 1.5e-55 219.9 177 66.1
Cpa.g.sc1097.2 Carica papaya HOM05D001177 ORTHO05D007091 1.3e-51 206.8 178 61.8
Dinv33388 Davidia involucrata HOM05D001177 ORTHO05D007091 2.7e-49 199.1 183 57.4
Dinv00599 Davidia involucrata HOM05D001177 ORTHO05D007091 7.8e-49 197.6 181 56.9
COL.COLO4_29271 Corchorus olitorius HOM05D001177 ORTHO05D007091 2.3e-48 196.1 178 56.7
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 3.0e-48 195.7 175 60.0
Duzib147G1186 Durio zibethinus HOM05D001177 ORTHO05D007091 3.0e-48 195.7 177 57.1
Atru.chr6.2479 Acer truncatum HOM05D001177 ORTHO05D007091 1.1e-47 193.7 183 58.5
Thecc.04G027000 Theobroma cacao HOM05D001177 ORTHO05D007091 7.3e-47 191.0 176 56.8
QL02p073037 Quercus lobata HOM05D001177 ORTHO05D007091 4.7e-46 188.3 178 59.0
QL02p073106 Quercus lobata HOM05D001177 ORTHO05D007091 4.7e-46 188.3 178 59.0
CiPaw.04G032700 Carya illinoinensis HOM05D001177 ORTHO05D007091 2.0e-44 183.0 177 57.1
TWI12G0650 Tripterygium wilfordii HOM05D001177 ORTHO05D007091 1.3e-43 180.3 173 60.1
Duzib187G1086 Durio zibethinus HOM05D001177 ORTHO05D007091 1.7e-43 179.9 172 54.7
Actinidia36159 Actinidia chinensis HOM05D001177 ORTHO05D007091 3.2e-42 175.6 175 54.3
RcHm_v2.0_Chr2g0174111 Rosa chinensis HOM05D001177 ORTHO05D007091 5.4e-42 174.9 178 56.2
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 7.0e-42 174.5 175 56.0
Gohir.A11G065300 Gossypium hirsutum HOM05D001177 ORTHO05D007091 3.5e-41 172.2 176 53.4
Gohir.D11G069600 Gossypium hirsutum HOM05D001177 ORTHO05D007091 6.0e-41 171.4 176 55.1
Gorai.007G074400 Gossypium raimondii HOM05D001177 ORTHO05D007091 7.8e-41 171.0 176 55.1
arahy.Tifrunner.gnm1.ann1.Q0SVNI Arachis hypogaea HOM05D001177 ORTHO05D007091 1.7e-40 169.9 177 53.7
MD17G1018600 Malus domestica HOM05D001177 ORTHO05D007091 2.3e-40 169.5 185 52.4
Rhsim10G0011600 Rhododendron simsii HOM05D001177 ORTHO05D007091 5.0e-40 168.3 179 49.7
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 2.5e-39 166.0 180 54.4
MD09G1017800 Malus domestica HOM05D001177 ORTHO05D007091 1.2e-38 163.7 183 52.5
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 2.1e-38 162.9 177 53.1
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 2.8e-38 162.5 151 57.6
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 1.8e-37 159.8 180 53.3
Lju41A46T90 Lonicera japonica HOM05D001177 ORTHO05D007091 5.2e-37 158.3 179 53.1
vmacro05919 Vaccinium macrocarpon HOM05D001177 ORTHO05D007091 5.2e-37 158.3 151 58.9
Nn3g16573 Nelumbo nucifera HOM05D001177 ORTHO05D007091 8.9e-37 157.5 172 51.2
Glyma.19G082000 Glycine max HOM05D001177 ORTHO05D007091 2.0e-36 156.4 183 49.2
PGR083G2095 Punica granatum HOM05D001177 ORTHO05D007091 2.0e-36 156.4 184 51.1
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 3.4e-36 155.6 185 48.6
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 4.4e-36 155.2 179 49.7
CANSAT64G1259 Cannabis sativa HOM05D001177 ORTHO05D007091 5.8e-36 154.8 150 53.3
FAN02G2178 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.3e-35 153.7 186 51.1
HanXRQChr09g0255621 Helianthus annuus HOM05D001177 ORTHO05D007091 1.3e-35 153.7 175 52.6
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 2.2e-35 152.9 172 52.3
Cc08_g11710 Coffea canephora HOM05D001177 ORTHO05D007091 2.9e-35 152.5 171 50.3
Migut.H00054 Erythranthe guttata HOM05D001177 ORTHO05D007091 2.9e-35 152.5 177 52.0
Sed0005287 Sechium edule HOM05D001177 ORTHO05D007091 2.9e-35 152.5 180 53.9
SGA_v2.0_scaffold135G34937 Striga asiatica HOM05D001177 ORTHO05D007091 2.9e-35 152.5 175 52.6
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 2.9e-35 152.5 171 51.5
PGSC0003DMG400006969 Solanum tuberosum HOM05D001177 ORTHO05D007091 1.4e-34 150.2 177 50.3
Lsat_1_v5_gn_4_183800 Lactuca sativa HOM05D001177 ORTHO05D007091 1.9e-34 149.8 174 48.9
Nitab4.5_0001031g0080 Nicotiana tabacum HOM05D001177 ORTHO05D007091 7.1e-34 147.9 212 44.3
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 1.6e-33 146.7 170 52.9
Peaxi162Scf00420g00254 Petunia axillaris HOM05D001177 ORTHO05D007091 2.1e-33 146.4 213 43.7
Psat3g169040 Pisum sativum HOM05D001177 ORTHO05D007091 2.1e-33 146.4 170 52.4
CSS0005984 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 3.5e-33 145.6 183 47.0
CSS0031107 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 3.5e-33 145.6 183 47.0
Nitab4.5_0001863g0200 Nicotiana tabacum HOM05D001177 ORTHO05D007091 6.0e-33 144.8 212 43.4
MELO3C014848.2 Cucumis melo HOM05D001177 ORTHO05D007091 1.0e-32 144.1 176 50.0
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 1.0e-32 144.1 174 50.6
ECA232G2553 Erigeron canadensis HOM05D001177 ORTHO05D007091 1.7e-32 143.3 177 48.6
Medtr7g035445 Medicago truncatula HOM05D001177 ORTHO05D007091 3.9e-32 142.1 174 50.6
Sed0019906 Sechium edule HOM05D001177 ORTHO05D007091 5.1e-32 141.7 177 49.7
THA.LOC104805349 Tarenaya hassleriana HOM05D001177 ORTHO05D007091 2.5e-31 139.4 160 49.4
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 4.3e-31 138.7 180 46.7
Solyc02g067970.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 5.6e-31 138.3 176 48.9
Sopen02g017100 Solanum pennellii HOM05D001177 ORTHO05D007091 5.6e-31 138.3 177 48.6
SHI03853 Sapria himalayana HOM05D001177 ORTHO05D007091 9.5e-31 137.5 192 49.5
Oeu048591.1 Olea europaea HOM05D001177 ORTHO05D007091 1.2e-30 137.1 139 56.1
PGSC0003DMG400020230 Solanum tuberosum HOM05D001177 ORTHO05D007091 6.2e-30 134.8 186 45.2
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 8.1e-30 134.4 184 45.7
FAN09G0779 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.4e-29 133.7 168 48.2
FAN09G4850 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.4e-29 133.7 168 48.2
CDE07G0753 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 2.3e-29 132.9 153 51.0
Solyc02g093760.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 2.3e-29 132.9 179 45.8
Gohir.A09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 6.8e-29 131.3 176 44.3
Gorai.006G037700 Gossypium raimondii HOM05D001177 ORTHO05D007091 8.9e-29 131.0 176 42.6
TAR371G1081 Trochodendron aralioides HOM05D001177 ORTHO05D007091 1.2e-28 130.6 176 44.3
FAN05G3425 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.3e-27 127.1 188 43.1
DCAR_002963 Daucus carota HOM05D001177 ORTHO05D007091 2.2e-27 126.3 156 48.1
TAR446G0002 Trochodendron aralioides HOM05D001177 ORTHO05D007091 2.2e-27 126.3 174 43.1
Nitab4.5_0005414g0040 Nicotiana tabacum HOM05D001177 ORTHO05D007091 1.1e-26 124.0 175 44.0
Aqoxy5G03563 Aquilegia oxysepala HOM05D001177 ORTHO05D007091 9.2e-26 120.9 221 36.7
AUR62005578 Chenopodium quinoa HOM05D001177 ORTHO05D007091 9.2e-26 120.9 148 46.6
Nitab4.5_0000040g0530 Nicotiana tabacum HOM05D001177 ORTHO05D007091 9.2e-26 120.9 178 46.6
Nn4g22453 Nelumbo nucifera HOM05D001177 ORTHO05D007091 1.6e-25 120.2 175 41.7
Sopen02g038400 Solanum pennellii HOM05D001177 ORTHO05D007091 3.5e-25 119.0 183 43.7
Ah.02g130620 Amaranthus hybridus HOM05D001177 ORTHO05D007091 7.8e-25 117.9 144 45.1
EL10Ac6g13445 Beta vulgaris HOM05D001177 ORTHO05D007091 7.8e-25 117.9 151 45.0
FAN14G2882 Fragaria x ananassa HOM05D001177 ORTHO05D007091 3.9e-24 115.5 196 40.3
FvH4_6g52470 Fragaria vesca HOM05D001177 ORTHO05D007091 7.3e-23 111.3 180 40.6
AUR62024152 Chenopodium quinoa HOM05D001177 ORTHO05D007091 9.6e-23 110.9 152 44.1
CARHR148650 Cardamine hirsuta HOM05D001177 ORTHO05D001507 1.4e-21 107.1 189 40.2
Sc03g0007010 Simmondsia chinensis HOM05D001177 ORTHO05D007091 2.4e-21 106.3 173 40.5
PSO384G2778 Papaver somniferum HOM05D001177 ORTHO05D007091 3.1e-21 105.9 151 44.4
Sc03g0006890 Simmondsia chinensis HOM05D001177 ORTHO05D007091 3.1e-21 105.9 174 40.2
AL5G16650 Arabidopsis lyrata HOM05D001177 ORTHO05D001507 4.0e-21 105.5 187 38.0
Carub.0005s0563 Capsella rubella HOM05D001177 ORTHO05D001507 8.9e-21 104.4 185 38.4
ATR0824G077 Amborella trichopoda HOM05D001177 ORTHO05D007091 2.9e-19 99.4 169 37.9
PSO017G0460 Papaver somniferum HOM05D001177 ORTHO05D007091 9.3e-18 94.4 148 41.9
Thhalv10003629m.g Eutrema salsugineum HOM05D001177 ORTHO05D001507 1.6e-17 93.6 188 36.7
AT3G27330 Arabidopsis thaliana HOM05D001177 ORTHO05D001507 3.5e-17 92.4 162 40.1
Sp2g16520 Schrenkiella parvula HOM05D001177 ORTHO05D001507 3.5e-17 92.4 162 39.5
Aa31LG2G5370 Aethionema arabicum HOM05D001177 ORTHO05D001507 1.0e-16 90.9 172 36.6
MBI11_g40895_MAGBIO Magnolia biondii HOM05D001177 ORTHO05D007091 1.5e-15 87.0 103 48.5
BolC2t11472H Brassica oleracea HOM05D001177 ORTHO05D001507 1.9e-15 86.7 181 37.0
C02p54100 Brassica napus HOM05D001177 ORTHO05D001507 2.5e-15 86.3 181 37.6
Hund24909 Selenicereus undatus HOM05D001177 ORTHO05D007091 5.6e-15 85.1 142 40.1
CDE04G1204 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 2.1e-14 83.2 81 54.3
Cfa007285 Carpinus fangiana HOM05D001177 ORTHO05D007091 6.2e-14 81.6 89 49.4
A02p35380 Brassica napus HOM05D001177 ORTHO05D007091 1.1e-13 80.9 181 31.5
Zm00001eb331370 Zea mays HOM05D001177 ORTHO05D007091 5.3e-13 78.6 177 34.5
SEGI_15562 Sequoiadendron giganteum HOM05D001177 ORTHO05D007091 3.4e-12 75.9 235 29.8
Os12g0267900 Oryza sativa ssp. japonica HOM05D001177 ORTHO05D007091 5.8e-12 75.1 155 34.2
PSO339G1540 Papaver somniferum HOM05D001177 ORTHO05D007091 5.8e-12 75.1 142 40.1
Mapoly0006s0009 Marchantia polymorpha HOM05D001177 ORTHO05D007091 8.4e-11 71.2 200 32.0
Nn6g31539 Nelumbo nucifera HOM05D001177 ORTHO05D007091 1.1e-10 70.9 122 39.3
PSO063G4178 Papaver somniferum HOM05D001177 ORTHO05D007091 1.9e-10 70.1 219 29.7
Nitab4.5_0001544g0170 Nicotiana tabacum HOM05D001177 ORTHO05D007091 9.3e-10 67.8 75 54.7
Thecc.04G025000 Theobroma cacao HOM05D001177 ORTHO05D007091 2.1e-09 66.6 73 52.1
BcaC03g14536 Brassica carinata HOM05D001177 ORTHO05D007091 2.7e-09 66.2 30 86.7
C07p39030 Brassica napus HOM05D001177 ORTHO05D007091 2.7e-09 66.2 30 86.7
C08p08490 Brassica napus HOM05D000546 ORTHO05D000398 2.7e-09 66.2 30 86.7
HPP92_004596 Vanilla planifolia HOM05D001177 ORTHO05D007091 7.9e-09 64.7 34 79.4
Peaxi162Scf00080g01722 Petunia axillaris HOM05D001177 ORTHO05D007091 1.0e-08 64.3 70 50.0
HPP92_004597 Vanilla planifolia HOM05D001177 ORTHO05D007091 1.3e-08 63.9 75 46.7
MD05G1086500 Malus domestica HOM05D001177 ORTHO05D007091 1.8e-08 63.5 46 63.0
C08p35970 Brassica napus HOM05D001177 ORTHO05D007091 3.3e-07 59.3 82 40.2
C09p60530 Brassica napus HOM05D001177 ORTHO05D007091 3.3e-07 59.3 82 40.2
Medtr7g035455 Medicago truncatula HOM05D001177 ORTHO05D007091 3.3e-07 59.3 62 51.6
CBR_g51805 Chara braunii HOM05D001177 ORTHO05D007091 5.6e-07 58.5 57 50.9
Zm00001eb111820 Zea mays HOM05D001177 ORTHO05D007091 1.3e-06 57.4 179 28.5
Ca_11723_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 4.8e-06 55.5 43 60.5


User provided reference genes

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