Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.8e-136 489.2 242 100.0
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 5.6e-101 371.3 236 76.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.2e-100 367.9 236 74.6
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.4e-99 366.7 237 74.3
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.8e-99 366.3 236 74.6
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-99 365.2 237 74.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 8.3e-97 357.5 236 73.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 5.4e-96 354.8 247 70.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 5.4e-96 354.8 232 72.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.6e-95 353.2 236 72.0
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.7e-95 352.4 239 71.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.0e-94 350.5 240 70.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.0e-94 350.5 236 71.2
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.7e-94 349.7 236 71.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.5e-93 345.9 236 72.0
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-93 345.9 238 70.2
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 7.3e-93 344.4 237 69.2
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 9.6e-93 344.0 237 70.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 9.6e-93 344.0 249 68.3
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.6e-92 343.2 240 71.2
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 3.6e-92 342.0 236 72.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.1e-91 340.5 241 68.5
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.4e-91 340.1 236 70.3
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.4e-91 339.3 236 68.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.2e-91 338.2 236 68.2
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 5.2e-91 338.2 241 69.3
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 8.9e-91 337.4 236 69.9
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-90 337.0 237 71.3
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-90 337.0 237 71.3
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.0e-90 336.3 236 68.6
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.0e-90 336.3 234 69.2
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-90 336.3 234 69.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 3.4e-90 335.5 236 70.8
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 7.6e-90 334.3 232 69.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-89 333.6 234 69.2
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.7e-89 333.2 236 70.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 6.4e-89 331.3 220 72.7
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.4e-89 330.9 238 69.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-88 330.5 237 70.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.4e-88 330.1 236 65.7
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.4e-88 330.1 241 68.5
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.9e-88 329.7 236 65.7
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.2e-88 328.9 236 69.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 4.2e-88 328.6 220 72.3
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.2e-88 328.6 243 66.3
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.6e-87 326.6 240 67.1
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.1e-87 326.2 236 65.3
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.7e-87 325.9 244 66.0
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.0e-86 323.9 248 63.3
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.9e-86 322.0 237 66.7
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 6.6e-86 321.2 240 64.6
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.9e-85 319.7 238 68.9
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.3e-85 318.9 236 65.3
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 3.3e-85 318.9 234 67.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.3e-84 317.0 234 67.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.1e-84 316.2 236 66.9
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.1e-84 316.2 234 64.5
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 8.1e-84 314.3 271 58.7
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.1e-83 313.9 237 66.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 5.3e-83 311.6 233 66.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 9.0e-83 310.8 236 65.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.0e-83 310.8 236 65.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.2e-82 310.5 239 63.2
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.0e-82 309.7 240 65.0
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.4e-82 308.5 235 67.7
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 7.6e-82 307.8 238 63.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.1e-80 303.9 236 64.4
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.9e-80 303.1 227 65.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.2e-80 302.4 239 64.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.2e-80 302.0 237 62.9
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 4.2e-80 302.0 240 61.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.4e-80 301.6 193 74.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 9.3e-80 300.8 174 82.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.6e-79 300.1 220 67.7
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.7e-79 299.3 178 79.8
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.5e-79 298.9 240 61.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 6.0e-79 298.1 233 62.7
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.0e-79 298.1 241 63.5
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-78 297.4 182 79.7
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.0e-78 297.4 235 60.4
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.3e-78 297.0 241 62.7
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.7e-78 296.6 240 63.3
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.7e-78 296.6 240 63.3
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.0e-78 295.8 237 60.3
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.1e-78 295.0 182 79.1
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.1e-78 295.0 238 61.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.6e-78 294.7 238 61.3
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.9e-77 293.1 182 76.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.5e-77 292.7 236 62.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.5e-77 292.7 178 78.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 5.6e-77 291.6 241 62.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 7.3e-77 291.2 180 77.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 9.6e-77 290.8 236 58.1
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.6e-76 290.0 179 79.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.8e-76 289.3 220 65.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.8e-76 289.3 237 60.8
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.6e-76 288.9 234 63.7
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 6.2e-76 288.1 236 63.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 6.2e-76 288.1 236 61.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-75 287.3 237 58.2
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-75 287.0 178 77.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.3e-75 285.0 267 56.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.4e-74 282.3 179 76.5
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 4.5e-74 282.0 180 75.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 5.8e-74 281.6 179 72.6
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 9.9e-74 280.8 234 60.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 1.3e-73 280.4 232 56.9
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 2.2e-73 279.6 232 59.9
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.4e-73 277.7 232 59.9
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.4e-73 277.7 243 57.6
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-72 276.9 215 65.1
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.4e-72 276.9 256 55.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 4.2e-72 275.4 178 74.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.1e-71 273.1 231 56.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.0e-70 270.8 175 73.7
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.0e-70 270.8 222 61.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.3e-70 270.4 165 79.4
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 8.7e-70 267.7 263 55.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.1e-69 267.3 263 55.1
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.5e-69 266.2 180 72.2
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.3e-69 265.8 181 69.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.3e-69 265.8 181 71.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.3e-68 263.8 268 53.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.1e-68 263.1 178 70.8
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.7e-68 262.3 261 51.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.1e-67 259.2 230 59.6
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.8e-66 255.0 179 70.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.5e-65 251.5 324 44.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.4e-65 251.1 170 71.8
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 8.4e-65 251.1 170 71.8
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.9e-64 250.0 171 70.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.2e-64 249.2 179 66.5
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.7e-63 246.1 178 69.1
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 6.0e-63 245.0 244 54.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 6.0e-63 245.0 233 56.7
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.7e-62 241.5 162 69.8
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-61 240.4 237 53.2
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-61 240.0 176 67.0
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 7.4e-61 238.0 167 65.9
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.8e-58 228.4 184 63.6
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.8e-57 225.7 168 66.1
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.0e-57 225.3 134 79.1
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.1e-55 219.9 127 82.7
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-55 219.2 138 76.8
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-53 214.2 210 55.7
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-53 214.2 210 55.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-53 213.8 139 72.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.0e-50 203.4 124 71.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.1e-45 187.6 164 59.8
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.4e-43 180.6 166 53.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.4e-35 153.3 218 41.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 8.8e-30 134.8 116 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.0e-22 111.3 101 53.5
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 6.8e-22 108.6 109 56.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.8e-20 103.2 134 46.3
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.1e-19 99.4 68 69.1
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.7e-17 94.0 173 32.4
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.2e-17 93.6 60 70.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 9.8e-13 78.2 48 64.6


User provided reference genes

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