Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 8.4e-117 423.7 214 100.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.2e-80 302.8 206 76.2
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.8e-80 301.6 206 75.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 6.3e-80 301.2 214 74.8
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.2e-80 300.8 215 75.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.4e-79 299.3 202 75.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.9e-79 297.7 206 75.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.5e-76 289.3 216 72.2
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 5.5e-76 288.1 220 73.2
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.7e-75 285.8 207 71.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.6e-75 285.4 201 75.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.6e-75 285.4 217 71.4
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-74 282.3 210 73.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.4e-73 278.5 220 69.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.7e-73 278.1 207 69.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-73 278.1 207 69.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.7e-73 278.1 207 69.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 7.4e-73 277.7 213 71.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.4e-73 277.7 213 71.8
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.7e-72 276.6 219 69.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.8e-72 275.8 207 69.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.8e-72 275.0 209 70.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.3e-72 274.6 208 71.2
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.2e-72 274.2 208 70.2
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.2e-72 274.2 208 71.2
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 8.2e-72 274.2 219 70.3
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 8.2e-72 274.2 202 70.3
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-72 274.2 207 68.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-71 273.9 202 69.8
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.4e-71 273.5 208 70.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.4e-71 273.5 218 68.8
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-71 272.7 206 70.9
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.4e-71 272.7 208 70.2
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-71 272.7 207 68.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-71 272.3 208 70.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-71 272.3 220 67.7
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 9.1e-71 270.8 209 69.9
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 9.1e-71 270.8 209 69.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 9.1e-71 270.8 209 69.9
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.2e-70 270.4 209 69.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.0e-70 269.6 209 69.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-70 268.9 215 67.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 7.7e-70 267.7 208 68.3
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.7e-69 266.5 208 69.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.7e-69 266.5 218 67.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.8e-69 265.4 207 69.6
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.8e-69 265.4 216 66.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 5.0e-69 265.0 157 84.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 6.5e-69 264.6 197 71.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 8.5e-69 264.2 213 68.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.1e-68 263.8 212 68.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.1e-68 263.8 215 65.6
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.1e-68 263.8 210 67.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 9.4e-68 260.8 220 68.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.1e-67 259.6 215 64.7
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-67 259.6 157 85.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-67 259.6 157 85.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.1e-67 259.6 220 67.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.1e-67 259.6 220 67.7
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 6.1e-67 258.1 215 67.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-66 256.9 204 71.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.0e-66 255.8 215 67.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.2e-66 255.0 219 68.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.1e-65 253.8 207 67.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.5e-65 253.4 214 66.4
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.4e-65 251.9 204 70.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.4e-65 251.9 272 55.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.7e-65 251.5 163 79.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 9.7e-65 250.8 154 81.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 9.7e-65 250.8 216 66.2
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 9.7e-65 250.8 156 78.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.7e-65 250.8 218 67.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.3e-64 250.4 215 64.2
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.7e-64 250.0 218 65.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.2e-64 249.6 216 64.4
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.8e-64 249.2 156 82.7
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.8e-64 248.4 224 61.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.8e-64 248.4 214 65.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.3e-64 248.1 207 65.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.3e-64 248.1 214 65.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.1e-63 247.3 209 66.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-63 247.3 197 68.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-63 247.3 209 65.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-63 247.3 209 65.1
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-63 246.9 209 65.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.8e-63 246.5 216 63.4
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.3e-63 245.0 204 64.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 218 64.2
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.0e-62 243.0 193 66.3
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.5e-62 242.3 213 62.9
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 5.9e-62 241.5 216 63.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-61 240.4 215 61.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.7e-61 240.0 155 78.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.9e-61 239.2 202 65.8
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.9e-60 236.5 214 62.1
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.5e-60 236.1 158 73.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-59 233.8 216 62.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.2e-59 233.8 205 65.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.1e-59 233.0 212 62.3
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-58 229.6 229 58.5
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 4.0e-58 228.8 208 62.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.6e-57 226.1 221 58.4
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 5.7e-57 224.9 214 61.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.7e-56 223.4 123 89.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.2e-56 223.0 164 69.5
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 6.3e-56 221.5 214 59.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 5.4e-55 218.4 219 58.4
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.7e-54 216.1 211 58.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.0e-53 214.2 207 59.4
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.3e-53 213.8 210 57.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.9e-53 212.6 153 71.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.9e-52 209.9 322 46.3
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.2e-52 208.8 213 58.2
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 7.2e-52 208.0 176 63.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.7e-51 206.1 156 69.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 6.1e-51 204.9 211 57.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.8e-50 203.4 156 64.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.3e-50 203.0 154 64.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.4e-49 198.7 216 56.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.4e-49 198.7 216 56.0
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.7e-49 198.4 118 81.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.2e-46 190.7 102 91.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.0e-46 189.9 139 69.8
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.7e-46 188.0 215 52.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.8e-45 185.7 120 75.8
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 9.5e-44 181.0 221 50.2
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.8e-42 176.8 223 52.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 5.2e-42 175.3 173 59.5
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.4e-39 167.2 93 86.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.0e-37 158.7 170 49.4
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-36 157.1 167 49.1
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.3e-36 155.6 81 93.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 5.6e-36 155.2 153 52.9
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.2e-33 147.5 131 55.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.2e-33 147.5 106 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 9.8e-33 144.4 115 59.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.3e-29 133.3 133 54.1
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.1e-27 124.8 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.1e-27 124.8 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.3e-26 123.2 80 76.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.5e-22 109.4 134 53.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.1e-18 97.8 143 49.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.4e-17 92.4 79 60.8
Manes.02G007001 Manihot esculenta HOM05D005092 ORTHO05D006073 1.6e-14 84.0 151 44.4
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-11 74.3 136 36.8
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.7e-08 63.9 63 55.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3


User provided reference genes

Program Settings