Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 0.0e+00 2205.6 1110 100.0
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.3e-241 839.0 1277 43.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.9e-227 791.6 1260 43.4
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 7.9e-227 791.6 1254 42.7
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 3.9e-226 789.3 1274 42.8
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.1e-219 766.9 1244 42.1
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 9.5e-196 688.3 1230 40.1
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 9.5e-188 661.8 1190 39.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 5.2e-186 656.0 1218 39.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 2.7e-182 643.7 1210 39.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.6e-165 585.5 1205 36.8
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.6e-161 573.9 1228 35.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 4.9e-160 569.7 1286 36.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.8e-155 553.1 1244 35.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 6.2e-155 552.7 1247 35.6
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 9.0e-154 548.9 1177 37.1
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 8.4e-152 542.3 1163 36.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.3e-149 535.0 1229 35.6
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 3.3e-148 530.4 1109 36.2
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.4e-148 529.3 1248 35.2
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 2.1e-147 527.7 1106 37.5
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.3e-146 523.1 999 39.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 6.0e-142 509.6 1085 36.9
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.9e-141 506.9 1137 35.5
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.0e-138 496.9 1139 35.6
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 7.4e-132 476.1 1115 35.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.9e-127 461.5 1218 33.2
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 8.7e-125 452.6 1102 34.2
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 4.8e-123 446.8 1163 33.6
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.1e-122 444.1 1211 32.8
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-121 442.2 947 35.9
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.5e-121 441.8 1237 32.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.0e-121 441.4 849 37.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.0e-121 441.4 1143 33.4
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 7.7e-121 439.5 1226 31.8
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.2e-120 438.0 1136 33.5
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 7.2e-119 433.0 1241 32.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.1e-94 351.7 950 32.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.7e-94 351.3 979 33.2
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.4e-92 344.0 1142 30.6
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.4e-90 339.0 973 33.6
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 6.8e-85 320.1 995 30.9
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.5e-84 316.6 983 31.1
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.6e-81 308.9 1202 29.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 5.9e-81 307.0 1234 28.1
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.1e-74 286.2 1198 28.9
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 9.2e-74 283.1 834 31.8
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.9e-73 280.4 850 31.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 3.6e-70 271.2 1200 28.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.6e-68 265.0 1078 28.7
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.2e-67 261.9 1150 28.5
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.1e-66 259.6 1118 26.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 2.3e-64 251.9 1012 28.2
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.5e-63 249.2 998 28.9
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.6e-62 245.7 1073 29.4
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 6.8e-61 240.4 1212 27.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-60 239.6 1165 26.6
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 9.9e-60 236.5 1228 28.0
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 9.9e-60 236.5 997 29.2
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.1e-58 233.0 1204 26.8
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.4e-58 231.9 1161 27.4
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 6.0e-57 227.3 1113 26.8
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.8e-57 226.9 1192 26.4
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 7.8e-57 226.9 1192 26.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.0e-56 226.5 1205 27.4
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 4.3e-55 221.1 959 28.4
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.1e-54 216.9 517 34.6
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.0e-52 212.2 1136 25.5
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 7.6e-52 210.3 1044 28.6
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.2e-51 208.8 832 28.1
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.4e-50 206.1 472 35.6
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.4e-50 206.1 976 27.5
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 4.1e-50 204.5 889 28.7
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 9.2e-50 203.4 983 27.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 6.0e-49 200.7 959 28.1
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.5e-47 196.1 968 27.8
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.9e-47 195.7 989 27.5
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 4.7e-46 191.0 1194 25.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.4e-45 189.5 536 31.5
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.4e-45 188.7 1209 25.3
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.9e-45 187.2 985 29.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.6e-44 185.3 986 29.1
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 5.8e-44 184.1 1276 25.8
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.6e-41 176.0 1141 25.8
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.1e-40 171.0 1125 26.3
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.4e-37 162.9 1094 26.0
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 6.9e-37 160.6 1148 27.3
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.3e-35 156.4 1286 24.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-35 156.4 398 34.4
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.9e-34 152.5 892 26.6
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 4.2e-34 151.4 1248 23.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 5.4e-34 151.0 1254 22.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.5e-31 142.9 700 26.4
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 3.7e-30 138.3 992 24.6
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.6e-28 132.1 509 27.7
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.2e-27 129.0 1141 23.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 3.8e-27 128.3 511 26.2
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.1e-26 126.7 377 32.4
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 3.9e-24 118.2 909 24.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.5e-23 116.3 1116 23.3
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 5.6e-23 114.4 182 44.5
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 9.6e-23 113.6 1142 23.1
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.4e-21 109.8 414 25.6
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 4.0e-21 108.2 274 36.5
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 4.0e-21 108.2 223 37.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 9.0e-21 107.1 511 25.4
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.9e-18 99.4 375 29.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.7e-17 95.5 383 28.2
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.0e-16 93.6 526 25.5
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.3e-16 93.2 642 24.8
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.7e-16 90.5 578 24.4
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.9e-15 89.4 373 26.0
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 5.7e-15 87.8 1081 21.7
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.6e-14 86.3 361 25.8
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 6.3e-14 84.3 372 26.9
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 4.1e-13 81.6 417 24.7
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 5.3e-13 81.3 385 28.8
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 5.3e-13 81.3 314 27.4
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 9.0e-13 80.5 364 26.6
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 9.0e-13 80.5 1053 23.6
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 9.0e-13 80.5 696 25.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.5e-12 79.7 187 29.9
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.5e-12 79.7 187 29.9
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 1.5e-12 79.7 276 29.0
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.0e-11 77.0 647 21.6
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.3e-11 76.6 365 27.4
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.3e-11 76.6 365 27.4
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 5.0e-11 74.7 365 27.1
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.0e-11 74.7 335 26.9
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.5e-11 74.3 468 24.8
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 8.5e-11 73.9 335 26.9
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.9e-10 72.8 250 26.4
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.9e-10 72.8 488 24.8
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.9e-10 72.8 250 26.4
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.9e-10 72.8 488 24.8
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 3.2e-10 72.0 355 23.9
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 5.5e-10 71.2 333 25.2
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 7.2e-10 70.9 251 27.1
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.2e-09 70.1 549 23.5
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.7e-09 68.9 366 25.1
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 4.6e-09 68.2 436 24.5
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 6.1e-09 67.8 630 21.6
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 7.9e-09 67.4 93 41.9
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.0e-08 67.0 1184 21.1
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.9e-08 65.1 413 25.4
BraA08t32888Z Brassica rapa HOM05D010823 ORTHO05D012736 3.9e-08 65.1 292 25.0
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 5.1e-08 64.7 583 23.8
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 6.7e-08 64.3 341 27.9
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.5e-07 63.2 435 24.4
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.9e-07 62.8 60 51.7
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 2.5e-07 62.4 441 24.5
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.3e-07 62.0 626 21.2
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.3e-07 62.0 198 29.3
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.7e-07 61.2 60 48.3
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 5.7e-07 61.2 202 29.7
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 4.8e-06 58.2 416 24.0
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.8e-06 58.2 60 48.3
Aa31LG6G7590 Aethionema arabicum HOM05D010823 ORTHO05D012736 8.2e-06 57.4 205 24.4


User provided reference genes

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