Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 0.0e+00 1490.7 807 100.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.1e-311 1073.2 821 72.4
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.5e-307 1058.5 826 72.0
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 7.4e-299 1030.4 829 70.1
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 2.7e-293 1011.9 874 67.7
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 8.2e-290 1000.3 874 67.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.4e-289 999.6 864 65.9
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.3e-282 976.5 902 63.7
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.1e-281 973.4 838 66.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.5e-278 962.2 889 64.2
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.9e-277 957.2 865 64.9
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.8e-276 956.1 854 64.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.3e-276 955.7 785 69.0
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.0e-271 940.3 854 64.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 5.0e-271 937.9 903 60.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.8e-268 927.2 860 63.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.0e-267 926.0 854 64.4
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 9.7e-267 923.7 863 64.5
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.8e-266 922.2 868 63.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.3e-263 913.3 863 63.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.7e-261 904.8 839 63.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.2e-260 901.4 880 60.3
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-256 890.2 877 60.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.6e-256 889.8 841 63.1
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.7e-256 889.0 841 63.0
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 2.9e-255 885.6 912 58.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.7e-250 868.6 878 58.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.3e-246 854.4 841 61.5
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.2e-245 853.6 886 57.9
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.4e-244 850.1 880 57.4
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-244 850.1 865 60.6
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.5e-243 846.7 839 59.2
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.6e-243 845.9 760 64.5
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 9.8e-243 844.0 877 57.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-242 842.0 865 60.5
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.4e-241 840.1 761 65.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.0e-241 837.8 869 57.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 9.2e-241 837.4 760 64.2
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.0e-240 836.3 862 58.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 5.9e-240 834.7 833 60.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.0e-239 833.9 877 56.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 8.6e-239 830.9 863 57.8
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 8.6e-239 830.9 843 58.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-238 830.5 866 59.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 4.3e-238 828.6 833 59.4
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 4.3e-238 828.6 873 56.9
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 7.3e-238 827.8 828 58.7
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-237 827.0 861 56.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.1e-237 826.2 849 59.1
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.8e-237 825.9 865 57.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.2e-237 824.7 861 58.5
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 6.2e-237 824.7 872 57.6
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.3e-236 822.8 860 59.4
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.0e-236 822.0 873 55.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.1e-233 812.0 817 59.1
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.0e-231 807.4 829 60.3
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.0e-231 805.1 841 57.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.6e-229 800.0 761 62.8
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.3e-228 796.2 880 56.6
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.6e-227 792.7 846 57.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.2e-226 789.6 864 58.7
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.9e-225 786.6 864 58.6
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.5e-224 782.3 873 56.0
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 8.6e-223 777.7 829 58.4
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.3e-222 774.6 751 62.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.1e-221 771.2 864 57.5
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 3.2e-217 759.2 897 53.3
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 9.2e-217 757.7 876 53.8
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.0e-215 754.2 838 54.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.1e-213 746.5 843 55.3
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 4.0e-212 742.3 833 55.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 7.6e-211 738.0 862 53.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.4e-209 731.9 806 56.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.4e-209 731.9 888 51.2
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 4.8e-205 718.8 844 51.7
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.5e-203 713.8 868 50.9
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 4.5e-203 712.2 913 51.7
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.3e-202 710.7 861 53.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.7e-202 710.3 844 54.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.4e-201 705.3 806 54.2
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.8e-199 700.3 826 51.1
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 8.7e-199 698.0 870 51.7
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.3e-197 694.1 882 52.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.3e-197 694.1 845 51.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-197 693.3 847 54.1
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.0e-195 686.8 796 55.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.6e-195 686.4 656 60.5
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.9e-194 682.9 871 51.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.4e-193 679.9 834 52.6
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.5e-192 676.0 860 52.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.8e-191 673.7 664 61.0
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.9e-191 672.5 824 52.3
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.8e-189 666.4 859 51.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 3.4e-187 659.4 864 50.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 8.4e-186 654.8 783 53.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.3e-181 641.0 844 49.6
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.2e-181 640.2 859 49.1
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 6.3e-181 638.6 824 51.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 7.6e-179 631.7 794 51.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.0e-178 629.0 848 48.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 6.1e-176 622.1 815 50.8
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.8e-175 618.2 801 51.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 7.2e-169 598.6 724 52.2
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.6e-168 596.3 829 49.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 7.9e-168 595.1 707 51.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.0e-167 594.7 837 48.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 4.8e-165 585.9 680 55.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.1e-161 574.7 645 53.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.0e-159 568.2 787 48.5
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 8.8e-159 565.1 893 44.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 8.8e-159 565.1 787 48.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 8.2e-157 558.5 829 47.2
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.8e-146 523.1 750 48.9
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 8.5e-146 521.9 847 43.6
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.5e-145 521.2 747 49.1
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 3.6e-144 516.5 747 48.3
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.0e-143 515.0 741 49.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-143 513.1 797 44.3
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.8e-141 506.1 823 43.1
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 8.3e-141 505.4 776 47.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.1e-140 505.0 746 47.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.4e-140 504.6 823 42.6
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 5.4e-140 502.7 748 48.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.1e-132 476.9 852 44.0
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.5e-129 467.2 785 42.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 6.8e-127 459.1 469 59.7
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 7.8e-123 445.7 730 45.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 7.8e-123 445.7 744 45.4
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.7e-122 444.5 731 46.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-121 441.8 727 46.5
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.1e-119 433.7 730 45.3
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.1e-119 433.7 740 46.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 4.4e-118 429.9 731 45.6
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.2e-115 421.8 409 61.1
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.1e-108 396.7 733 43.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-97 360.9 306 66.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-97 360.9 306 66.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 6.4e-93 346.3 371 56.1
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 2.6e-78 297.7 969 31.1
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 4.5e-78 297.0 289 63.0
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 8.4e-77 292.7 654 38.8
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.0e-70 271.6 415 42.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.1e-68 265.8 874 33.3
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.2e-68 264.2 726 35.1
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 9.3e-68 262.7 729 33.1
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.8e-64 251.1 742 32.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.1e-55 220.7 784 28.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 5.0e-53 213.8 373 43.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.0e-41 175.3 144 68.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-39 169.5 163 55.2
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 2.4e-39 168.3 137 67.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 2.6e-38 164.9 164 59.8
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 4.8e-32 144.1 255 41.6
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-28 132.9 172 48.3
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.8e-26 125.6 96 67.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.2e-24 118.6 114 56.1
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 4.8e-24 117.5 119 58.8
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.9e-22 110.5 133 54.1
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 5.0e-21 107.5 188 38.8
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.2e-20 104.4 125 47.2
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.2e-19 102.8 76 73.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.6e-19 102.4 127 45.7
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-17 96.3 163 39.3
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.2e-16 92.0 97 60.8
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 3.7e-16 91.3 87 62.1
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 6.3e-16 90.5 466 28.8
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.4e-15 89.4 197 37.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 1.4e-15 89.4 87 60.9
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.8e-15 89.0 398 30.7
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.5e-12 79.3 209 35.4
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 3.6e-11 74.7 134 37.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.7e-08 64.7 45 64.4
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.4e-07 62.8 59 62.7
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.4e-07 60.8 88 46.6
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 7.0e-07 60.5 193 32.1
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.6e-06 59.3 71 42.3
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 2.0e-06 58.9 70 42.9


User provided reference genes

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