Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.8e-105 386.0 201 100.0
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.7e-92 340.9 201 87.6
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 6.5e-87 324.3 201 85.6
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.9e-86 322.8 202 81.2
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 9.4e-86 320.5 185 87.0
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.5e-83 313.2 203 82.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 9.7e-83 310.5 201 80.1
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.7e-82 309.7 202 79.7
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.8e-82 308.9 199 81.4
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 8.2e-82 307.4 203 80.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.8e-81 306.2 201 78.1
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 5.9e-80 301.2 202 77.7
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 5.9e-80 301.2 202 77.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.3e-79 300.1 202 77.2
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.3e-79 300.1 202 77.2
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 2.2e-79 299.3 202 77.2
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.2e-79 299.3 202 77.7
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.9e-79 298.9 204 77.9
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.9e-79 298.9 204 77.9
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.0e-79 298.1 201 78.1
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 5.0e-79 298.1 203 77.8
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.9e-78 296.2 202 77.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.5e-78 295.8 203 77.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.2e-78 295.4 200 75.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.2e-78 295.4 205 75.6
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.2e-78 295.0 194 78.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.5e-78 294.7 201 74.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.5e-78 294.7 202 75.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 7.2e-78 294.3 189 81.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.1e-77 292.7 203 77.3
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.7e-77 292.4 202 76.2
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.0e-76 290.4 201 75.1
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.0e-76 290.4 202 74.8
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.0e-75 286.2 219 70.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.6e-75 285.8 202 74.8
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 9.7e-75 283.9 207 72.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.3e-74 283.5 203 73.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.7e-74 283.1 202 74.3
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.7e-74 282.0 200 72.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.7e-74 282.0 207 75.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.7e-74 282.0 207 75.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-73 280.0 178 79.8
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.4e-73 280.0 178 79.8
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.4e-73 279.3 201 71.6
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.1e-73 278.9 179 79.3
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.1e-73 278.5 206 72.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.1e-73 278.5 177 79.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 7.0e-73 277.7 201 71.1
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-72 276.9 148 93.2
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.6e-72 276.6 171 80.7
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.6e-72 276.6 203 72.9
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 7.7e-72 274.2 205 72.7
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 7.7e-72 274.2 205 72.7
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.3e-71 273.5 201 72.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.3e-71 273.5 201 71.6
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.7e-71 273.1 208 72.1
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.2e-71 272.7 201 70.1
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.1e-70 270.4 208 71.2
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.1e-70 270.4 209 73.7
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.9e-70 269.6 205 71.2
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.2e-70 268.9 207 71.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 5.5e-70 268.1 211 70.1
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.4e-70 267.3 235 63.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-69 266.9 168 79.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.2e-69 266.9 201 69.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.1e-69 264.6 160 80.6
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.4e-68 263.5 210 71.0
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.3e-68 262.7 211 65.9
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.0e-68 262.3 215 67.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.8e-68 261.2 145 87.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.5e-67 260.0 148 85.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.5e-67 260.0 151 84.8
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 4.4e-67 258.5 175 77.1
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 9.8e-67 257.3 181 75.1
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.2e-66 256.1 195 69.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.8e-66 255.8 148 83.8
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 3.7e-66 255.4 151 84.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 6.3e-66 254.6 148 83.8
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.3e-66 254.2 212 65.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.4e-65 251.5 211 63.5
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.4e-65 251.5 148 84.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 9.1e-65 250.8 180 73.3
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-64 250.4 247 57.5
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.6e-64 250.0 211 65.4
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.0e-64 249.6 179 73.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.7e-64 249.2 186 71.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.5e-64 248.8 148 83.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 3.5e-64 248.8 205 66.3
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 5.9e-64 248.1 145 82.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.3e-63 246.9 160 80.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.3e-63 246.9 205 67.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.9e-63 245.7 200 65.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 6.6e-63 244.6 149 82.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 6.6e-63 244.6 203 65.5
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-62 243.8 184 71.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.5e-62 243.4 160 78.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.9e-62 243.0 145 83.4
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-62 243.0 149 81.2
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 3.3e-62 242.3 204 68.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 4.2e-62 241.9 148 81.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 5.5e-62 241.5 240 59.2
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.2e-61 240.4 148 81.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.6e-61 238.8 148 79.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.6e-61 238.8 148 78.4
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-61 238.8 169 75.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-61 238.8 169 75.7
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.7e-61 238.4 148 79.1
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 6.1e-61 238.0 143 81.8
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.0e-60 237.3 148 81.1
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.3e-60 236.1 148 79.1
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.4e-59 232.3 155 76.8
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-58 229.9 202 67.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.2e-58 229.6 148 80.4
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-58 229.2 203 67.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-58 228.8 202 66.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 8.3e-58 227.6 160 73.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.4e-57 226.9 186 65.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-57 226.1 203 66.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.1e-57 225.3 201 61.7
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 9.2e-57 224.2 177 65.5
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.9e-56 221.5 148 75.7
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.7e-55 219.9 225 59.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.7e-55 219.9 167 67.7
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.3e-55 219.5 177 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.0e-55 218.4 153 69.3
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 6.6e-55 218.0 219 62.1
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 6.6e-55 218.0 219 62.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 8.6e-55 217.6 194 64.4
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.8e-53 212.6 207 57.0
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.8e-53 212.6 204 57.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.6e-53 212.2 148 73.0
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 5.2e-52 208.4 219 59.8
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.5e-51 206.8 148 70.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.4e-51 205.7 161 71.4
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.5e-51 204.5 123 81.3
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.9e-50 202.6 160 62.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.1e-49 198.7 155 65.8
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 5.4e-49 198.4 186 58.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.0e-47 194.1 123 78.0
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 3.9e-47 192.2 161 66.5
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 4.7e-45 185.3 149 67.8
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 6.2e-45 184.9 106 86.8
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.1e-44 182.6 149 61.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.2e-44 181.8 144 65.3
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.6e-43 179.5 205 51.7
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-41 174.1 163 58.9
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-41 173.3 109 79.8
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-40 170.6 117 73.5
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 8.1e-37 157.9 92 82.6
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.0e-35 153.3 89 84.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 5.8e-35 151.8 82 89.0
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 9.2e-33 144.4 135 59.3
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 3.3e-30 136.0 132 59.1
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.4e-28 130.6 153 53.6
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 3.3e-22 109.4 84 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.1e-21 106.7 98 55.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.1e-21 106.7 140 41.4
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.9e-18 96.3 170 34.1
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 2.1e-13 80.1 77 57.1
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-11 73.9 68 58.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 2.2e-10 70.1 184 31.0
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.4e-10 68.6 59 59.3
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 1.6e-08 63.9 102 43.1
TAR623G1727 Trochodendron aralioides HOM05D004280 ORTHO05D005059 8.7e-07 58.2 54 63.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.9e-06 57.0 33 75.8


User provided reference genes

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