Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 3.6e-274 947.6 465 100.0
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 2.6e-163 579.3 447 66.7
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 7.1e-161 571.2 447 65.3
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 2.1e-160 569.7 447 66.2
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 1.3e-159 567.0 447 65.8
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 3.3e-158 562.4 466 63.5
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 1.9e-153 546.6 441 64.2
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 1.3e-151 540.4 450 62.7
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 3.3e-150 535.8 480 57.7
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 8.1e-149 531.2 411 66.7
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 3.4e-147 525.8 499 57.9
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 1.1e-145 520.8 486 58.6
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 3.2e-145 519.2 475 58.3
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.2e-145 519.2 463 61.1
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 7.1e-145 518.1 464 58.4
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 9.3e-145 517.7 463 60.7
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 2.1e-144 516.5 475 57.9
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 1.0e-143 514.2 425 60.7
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.0e-143 514.2 463 60.5
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.7e-143 513.5 463 60.0
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 1.1e-140 504.2 464 59.1
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 3.4e-139 499.2 440 59.1
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 5.8e-139 498.4 480 52.5
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 7.6e-139 498.0 470 57.9
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.9e-138 495.4 472 56.1
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.9e-138 495.4 472 56.1
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 1.1e-137 494.2 488 54.1
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 1.9e-137 493.4 437 57.4
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 5.5e-137 491.9 476 56.1
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 7.9e-136 488.0 441 56.9
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 1.0e-135 487.6 475 54.9
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 1.3e-135 487.3 483 55.5
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 3.0e-135 486.1 476 53.4
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 3.0e-135 486.1 477 55.6
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 3.9e-135 485.7 490 53.7
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 7.4e-134 481.5 389 61.2
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 7.4e-134 481.5 492 54.1
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 1.3e-133 480.7 462 55.0
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 2.1e-133 479.9 495 52.5
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 2.1e-133 479.9 475 52.2
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 2.1e-133 479.9 388 60.6
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 4.8e-133 478.8 375 61.3
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 4.8e-133 478.8 484 52.7
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 8.1e-133 478.0 479 53.9
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 1.1e-132 477.6 467 54.4
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 1.1e-132 477.6 474 53.8
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 1.4e-132 477.2 457 55.8
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 1.8e-132 476.9 490 53.3
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 5.3e-132 475.3 446 55.8
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 9.0e-132 474.6 389 61.4
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 1.5e-131 473.8 472 53.2
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 3.4e-131 472.6 475 53.3
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 4.5e-131 472.2 390 60.5
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 2.9e-130 469.5 463 53.6
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 6.5e-130 468.4 388 59.0
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 1.4e-129 467.2 486 52.7
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 2.5e-129 466.5 420 58.6
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 4.2e-129 465.7 466 53.6
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 5.5e-129 465.3 374 61.2
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 7.1e-129 464.9 432 57.6
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 9.3e-129 464.5 468 53.0
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 9.3e-129 464.5 370 61.9
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.1e-128 463.4 430 55.3
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 3.5e-128 462.6 475 53.1
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 4.6e-128 462.2 463 53.8
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 1.9e-126 456.8 467 53.5
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 4.3e-126 455.7 487 53.4
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 4.8e-125 452.2 455 54.3
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 1.1e-124 451.1 395 57.0
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 1.8e-124 450.3 370 60.0
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 3.1e-124 449.5 375 59.2
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.2e-123 447.6 363 62.0
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 4.5e-123 445.7 474 51.7
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 4.5e-123 445.7 427 52.9
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 3.8e-122 442.6 468 51.7
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 5.0e-122 442.2 415 56.9
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 6.5e-122 441.8 450 52.0
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 1.1e-121 441.0 459 51.0
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 3.2e-121 439.5 471 51.6
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 3.2e-121 439.5 471 51.6
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 3.2e-121 439.5 471 51.6
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 3.2e-121 439.5 430 54.4
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 4.2e-121 439.1 433 52.9
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 5.5e-121 438.7 472 51.5
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 1.2e-120 437.6 427 55.0
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 3.5e-120 436.0 395 56.7
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.0e-119 434.5 368 57.6
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 1.8e-119 433.7 421 53.9
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 2.3e-119 433.3 472 51.9
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 8.7e-119 431.4 462 50.0
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 2.5e-118 429.9 385 56.9
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 1.6e-117 427.2 462 50.4
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 5.3e-116 422.2 445 50.6
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 2.2e-114 416.8 412 53.2
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 3.2e-113 412.9 384 51.8
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 2.1e-112 410.2 412 52.4
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 7.9e-112 408.3 424 50.9
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 1.4e-103 380.9 475 46.3
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 1.4e-95 354.4 374 46.8
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 6.8e-79 298.9 355 44.8
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 2.2e-77 293.9 333 51.7
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.7e-77 293.1 426 42.0
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 1.8e-71 274.2 350 42.6
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 1.5e-70 271.2 202 60.4
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 1.8e-68 264.2 389 39.8
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 1.8e-68 264.2 324 48.1
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.0e-66 258.5 251 52.6
PRCOL_00004009 Prasinoderma coloniale HOM05D006399 ORTHO05D007988 3.3e-49 200.3 387 35.1
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 2.8e-48 197.2 480 32.7
Lj7C251T2 Lonicera japonica HOM05D006399 ORTHO05D007988 3.1e-47 193.7 303 39.3
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 3.2e-36 157.1 366 33.3
COL.COLO4_27992 Corchorus olitorius HOM05D006399 ORTHO05D007988 7.3e-33 146.0 223 44.4
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 3.6e-32 143.7 413 30.5
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 1.1e-31 142.1 364 31.9
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 2.1e-27 127.9 320 33.1
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 3.5e-27 127.1 127 52.0
TWI75G1459 Tripterygium wilfordii HOM05D006399 ORTHO05D007988 4.6e-27 126.7 128 50.0
Lj7P254T18 Lonicera japonica HOM05D006399 ORTHO05D007988 7.9e-27 125.9 119 53.8
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.8e-24 117.5 256 36.3
Hma1.2p1_0235F.1_g098770 Hydrangea macrophylla HOM05D006399 ORTHO05D007988 1.8e-15 88.2 52 69.2
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.3e-10 71.2 224 29.0
AagrBONN_evm.TU.Sc2ySwM_362.1561 Anthoceros agrestis HOM05D006399 ORTHO05D007988 3.0e-10 70.9 233 30.5
SGA_v2.0_scaffold109G31082 Striga asiatica HOM05D006399 ORTHO05D007988 6.3e-08 63.2 46 60.9


User provided reference genes

Program Settings