Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 3.6e-103 378.3 190 100.0
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.6e-74 283.1 188 73.4
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.9e-73 278.5 190 72.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.9e-73 278.5 190 72.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.9e-72 276.2 190 72.6
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.2e-71 273.5 188 71.8
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.2e-71 273.5 188 71.8
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.2e-71 273.5 189 73.5
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.1e-71 272.7 191 71.7
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 4.7e-71 271.6 190 70.0
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.4e-70 270.0 188 71.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 2.3e-70 269.2 188 68.6
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 5.2e-70 268.1 190 70.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 8.9e-70 267.3 190 70.5
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 3.7e-68 261.9 184 69.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 6.4e-68 261.2 187 70.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 8.4e-68 260.8 188 70.2
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.1e-67 260.4 190 67.4
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.1e-67 260.4 190 67.4
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.1e-67 260.4 190 67.4
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.4e-67 260.0 190 66.3
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.4e-67 260.0 190 67.4
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.9e-67 259.6 190 67.9
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.4e-67 259.2 188 67.6
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.2e-67 258.8 182 69.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.2e-67 258.8 182 69.2
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 5.4e-67 258.1 188 68.6
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 7.1e-67 257.7 184 66.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 7.1e-67 257.7 188 66.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.1e-66 256.1 187 67.9
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.1e-66 256.1 207 64.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.1e-66 256.1 182 69.2
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 2.7e-66 255.8 190 66.8
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.7e-66 255.8 189 67.2
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.7e-66 255.8 187 67.4
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 3.5e-66 255.4 190 66.8
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-66 255.4 189 67.7
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-66 255.0 188 67.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.3e-65 253.4 188 66.5
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 67.4
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 3.0e-65 252.3 184 67.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 3.0e-65 252.3 189 67.2
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 3.0e-65 252.3 187 66.3
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 6.6e-65 251.1 179 67.0
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-64 250.4 189 66.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.5e-64 250.0 188 64.9
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.9e-64 249.6 187 66.3
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 4.3e-64 248.4 188 65.4
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.3e-64 248.4 187 66.8
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.6e-64 248.1 190 63.2
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.6e-64 248.1 176 69.9
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.3e-64 247.7 185 65.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 7.3e-64 247.7 190 64.7
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.2e-63 246.9 190 65.3
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.2e-63 246.9 189 65.6
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.6e-63 246.5 183 66.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.1e-63 246.1 185 65.9
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.1e-63 246.1 190 62.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 2.1e-63 246.1 190 62.6
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.1e-63 246.1 205 62.4
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.1e-63 246.1 186 66.1
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.8e-63 245.7 188 66.0
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 3.6e-63 245.4 179 64.8
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.7e-63 245.0 190 65.8
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 6.2e-63 244.6 187 64.2
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 6.2e-63 244.6 204 61.8
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.4e-62 243.4 188 64.4
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.4e-62 243.4 190 64.2
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.1e-62 242.3 190 64.2
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 5.2e-62 241.5 187 63.1
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 6.8e-62 241.1 188 63.3
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.8e-62 241.1 188 64.9
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.2e-61 240.4 188 63.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.5e-61 240.0 183 65.6
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.6e-61 239.2 212 59.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.4e-61 238.8 175 65.7
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.4e-61 238.4 188 64.9
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.4e-61 238.4 188 64.9
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 4.4e-61 238.4 175 63.4
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.9e-60 235.7 179 63.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 8.4e-60 234.2 184 61.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.1e-59 233.8 188 58.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.1e-59 233.8 179 63.1
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.4e-59 233.4 175 65.1
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.9e-59 233.0 175 66.9
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.4e-59 232.6 174 62.6
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.2e-58 230.3 152 75.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.6e-58 229.9 175 64.0
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.5e-58 228.8 175 65.1
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.0e-57 227.3 186 60.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.0e-57 227.3 184 60.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.0e-57 225.7 159 70.4
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 8.7e-57 224.2 171 61.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 6.9e-54 214.5 176 58.5
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 4.4e-53 211.8 269 44.6
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 5.8e-53 211.5 184 55.4
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.7e-52 209.9 189 55.0
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-52 209.9 182 54.4
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 2.2e-52 209.5 156 67.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 8.4e-52 207.6 188 53.7
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 5.4e-51 204.9 184 53.3
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 3.5e-50 202.2 184 52.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 6.0e-50 201.4 184 52.7
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.3e-49 200.3 183 54.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.1e-49 198.4 184 52.7
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.5e-48 196.8 184 52.7
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.5e-48 196.1 161 61.5
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.6e-47 193.4 184 51.1
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.8e-46 189.9 184 51.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.2e-45 187.2 184 51.6
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 7.6e-45 184.5 184 50.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.2e-44 183.0 184 50.0
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.2e-44 183.0 184 50.0
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-44 183.0 184 50.0
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.9e-44 182.6 182 55.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 4.6e-42 175.3 184 48.4
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.3e-41 173.7 175 55.4
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.0e-41 172.6 207 47.8
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 6.7e-41 171.4 184 47.3
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 6.7e-41 171.4 184 47.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 3.8e-36 155.6 148 53.4
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 6.0e-34 148.3 184 44.6
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.3e-31 140.6 155 52.9
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.2e-31 137.9 106 66.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.0e-30 134.4 114 59.6
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 3.3e-24 115.9 85 68.2
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 4.1e-22 109.0 151 41.7
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.2e-21 107.5 98 60.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 7.7e-21 104.8 73 69.9
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.7e-20 103.6 155 39.4
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.0e-20 102.1 94 51.1
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.1e-19 100.9 81 63.0
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.9e-19 100.1 159 37.1
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 2.5e-19 99.8 78 59.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.0e-17 92.8 83 51.8
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 3.9e-17 92.4 119 39.5
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.1e-17 92.0 79 53.2
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.1e-17 92.0 83 50.6
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.5e-16 90.5 61 68.9
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.5e-11 73.2 64 60.9
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 7.9e-10 68.2 93 41.9
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-07 60.8 90 43.3
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 2.2e-07 60.1 45 60.0


User provided reference genes

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