Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.8e-78 294.7 140 100.0
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-47 193.4 141 66.7
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.1e-47 192.6 141 67.4
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.3e-45 185.3 131 67.9
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.3e-45 184.9 138 65.9
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 7.3e-45 184.1 112 79.5
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.6e-44 181.8 140 63.6
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.6e-44 181.8 140 63.6
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 4.7e-44 181.4 153 61.4
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.1e-43 180.3 132 67.4
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-43 179.1 139 64.0
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-43 179.1 139 64.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 3.1e-43 178.7 136 64.7
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 4.0e-43 178.3 137 65.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.5e-42 176.4 137 63.5
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.6e-42 175.6 140 63.6
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.4e-42 175.3 138 60.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.7e-41 172.9 137 63.5
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.7e-41 172.9 137 61.3
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.7e-41 172.9 137 61.3
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.9e-41 171.4 139 65.5
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.4e-40 169.9 138 63.0
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.4e-40 169.9 137 59.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.4e-40 167.9 140 63.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 7.1e-40 167.5 140 59.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 7.1e-40 167.5 140 59.3
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 9.3e-40 167.2 140 59.3
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 9.3e-40 167.2 142 59.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 9.3e-40 167.2 134 60.4
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.6e-39 166.4 137 62.0
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.7e-39 165.6 142 58.5
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.0e-39 164.5 140 61.4
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 6.0e-39 164.5 137 59.1
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.8e-39 164.1 138 58.7
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.7e-38 162.9 137 58.4
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.3e-38 162.5 123 64.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 5.1e-38 161.4 134 63.4
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 5.1e-38 161.4 134 63.4
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 5.1e-38 161.4 137 58.4
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 5.1e-38 161.4 121 65.3
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 6.6e-38 161.0 140 58.6
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 6.6e-38 161.0 130 61.5
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 6.6e-38 161.0 138 60.1
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 8.7e-38 160.6 139 59.0
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.5e-37 159.8 137 57.7
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.9e-37 159.5 141 59.6
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-37 159.5 133 62.4
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 5.6e-37 157.9 131 60.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.3e-37 157.5 137 57.7
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.6e-36 156.4 138 58.7
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.1e-36 156.0 137 56.9
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.6e-36 155.2 141 57.4
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.8e-36 154.8 140 57.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.1e-35 153.7 140 56.4
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.8e-35 152.9 141 56.7
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 3.1e-35 152.1 143 55.9
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 3.1e-35 152.1 140 55.0
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.0e-35 151.8 138 58.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.9e-33 144.8 138 54.3
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.9e-33 144.8 130 57.7
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 6.4e-33 144.4 141 56.7
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 8.4e-33 144.1 135 53.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-32 143.7 140 57.1
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.4e-32 143.3 138 54.3
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 4.2e-32 141.7 141 55.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.2e-32 141.7 125 58.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 4.2e-32 141.7 101 68.3
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.2e-32 141.7 139 56.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.4e-32 141.4 141 55.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 7.1e-32 141.0 139 56.1
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 2.1e-31 139.4 134 56.0
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 2.7e-31 139.0 137 57.7
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 3.5e-31 138.7 138 52.9
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.5e-31 138.7 133 53.4
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 4.6e-31 138.3 114 63.2
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 4.6e-31 138.3 129 53.5
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 6.0e-31 137.9 135 51.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 6.0e-31 137.9 135 51.9
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.0e-30 137.1 129 53.5
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.3e-30 136.7 135 52.6
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 126 55.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-30 136.7 138 53.6
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.3e-30 136.7 129 53.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.8e-30 136.3 138 51.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.0e-30 135.6 135 52.6
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.0e-30 135.6 125 56.8
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 5.1e-30 134.8 142 52.8
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.7e-30 134.0 117 59.8
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 1.5e-29 133.3 144 51.4
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 3.3e-29 132.1 139 49.6
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 7.4e-29 131.0 138 52.2
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.6e-28 129.8 109 60.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.6e-28 129.8 129 55.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.8e-28 129.0 138 49.3
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 3.6e-28 128.6 187 43.9
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 4.8e-28 128.3 141 50.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.4e-27 126.7 112 58.9
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-27 126.3 111 58.6
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.4e-27 125.9 132 53.8
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.4e-27 125.9 132 53.8
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 4.0e-27 125.2 131 49.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 9.0e-27 124.0 130 51.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.2e-26 123.6 119 57.1
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.2e-26 123.6 141 48.2
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.5e-26 123.2 123 52.0
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.4e-26 122.1 114 56.1
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.5e-26 121.7 130 51.5
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.8e-26 121.3 158 49.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 9.9e-26 120.6 133 51.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-25 120.2 131 51.1
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.3e-25 120.2 132 49.2
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.7e-25 119.8 131 51.9
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.7e-25 119.8 116 54.3
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.7e-25 119.8 136 50.0
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.4e-24 115.9 75 70.7
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 2.4e-24 115.9 140 45.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.2e-24 115.5 59 86.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 7.1e-24 114.4 140 46.4
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.1e-24 114.4 138 45.7
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.7e-23 112.5 127 49.6
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.5e-23 112.1 136 47.8
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.5e-23 112.1 76 63.2
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 3.0e-22 109.0 116 55.2
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 8.7e-22 107.5 64 75.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.5e-21 106.7 63 71.4
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.5e-21 105.9 62 72.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.6e-21 104.8 61 73.8
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 9.6e-21 104.0 173 38.7
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.6e-20 103.2 115 49.6
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.8e-20 102.4 133 48.1
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 3.7e-20 102.1 72 68.1
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.8e-19 99.8 97 54.6
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.5e-18 96.7 52 80.8
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 6.5e-17 91.3 115 49.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-16 90.5 60 66.7
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.2e-15 87.0 105 50.5
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 3.0e-14 82.4 51 64.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 3.0e-14 82.4 52 65.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.1e-13 80.5 50 62.0
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-13 80.1 148 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.5e-13 79.3 54 66.7
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.3e-13 79.0 104 45.2
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 7.4e-13 77.8 50 74.0
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 3.7e-12 75.5 92 51.1
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.1e-11 72.4 49 61.2
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.0e-10 69.7 83 48.2
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 5.9e-10 68.2 40 75.0
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.9e-09 65.9 86 44.2
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 6.1e-07 58.2 37 70.3
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.0e-06 55.8 71 49.3
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 6.7e-06 54.7 95 34.7


User provided reference genes

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