Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 6.2e-52 207.6 141 100.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.6e-31 139.8 141 70.9
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.6e-31 138.3 130 60.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 4.3e-29 131.7 141 68.8
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.3e-28 130.2 149 65.1
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.6e-28 129.8 146 73.3
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 2.2e-28 129.4 143 61.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.7e-28 128.6 148 57.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.7e-28 128.6 148 68.2
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.3e-28 127.9 130 73.1
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.2e-26 123.6 136 64.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.0e-25 118.2 139 51.1
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 4.2e-24 115.2 131 60.3
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 7.2e-24 114.4 146 56.2
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.7e-23 112.5 142 60.6
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.6e-23 111.7 124 54.8
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 7.9e-23 110.9 144 70.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 7.9e-23 110.9 144 70.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 7.9e-23 110.9 124 51.6
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-22 110.2 133 51.1
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.8e-22 109.8 117 54.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.0e-22 109.0 121 53.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 3.0e-22 109.0 124 52.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.9e-22 108.6 131 47.3
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.9e-22 108.6 135 73.3
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.1e-22 108.2 142 50.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.7e-22 107.8 156 56.4
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 6.7e-22 107.8 148 45.9
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.8e-22 107.5 124 51.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.1e-21 107.1 158 57.0
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.0e-21 106.3 123 55.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.6e-21 105.9 148 45.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 5.7e-21 104.8 138 50.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 5.7e-21 104.8 138 50.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 5.7e-21 104.8 138 50.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 5.7e-21 104.8 138 50.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.7e-21 104.8 138 71.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 5.7e-21 104.8 127 58.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-21 104.4 138 46.4
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-21 104.4 138 50.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 7.4e-21 104.4 132 72.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.7e-21 104.0 145 59.3
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 9.7e-21 104.0 89 64.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.3e-20 103.6 143 46.2
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.7e-20 103.2 151 57.0
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 2.2e-20 102.8 123 50.4
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.8e-20 102.4 124 61.3
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.7e-20 102.1 143 49.0
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.8e-20 101.7 130 67.7
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 6.3e-20 101.3 122 63.1
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 8.2e-20 100.9 128 57.8
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-19 99.4 145 50.3
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.4e-19 99.4 137 48.2
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.4e-19 99.4 147 51.7
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 3.1e-19 99.0 141 52.5
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-19 99.0 141 52.5
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 3.1e-19 99.0 141 52.5
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 3.1e-19 99.0 142 62.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 5.3e-19 98.2 148 49.3
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.3e-19 98.2 157 51.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.3e-19 98.2 125 60.0
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 6.9e-19 97.8 141 48.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 6.9e-19 97.8 141 46.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 9.1e-19 97.4 117 63.2
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-18 96.7 143 53.8
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.0e-18 96.3 141 48.9
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.0e-18 96.3 138 57.2
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.6e-18 95.9 127 48.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.5e-18 95.1 126 55.6
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.5e-18 95.1 138 44.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 4.5e-18 95.1 135 61.5
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.0e-17 94.0 167 46.7
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.3e-17 93.6 144 55.6
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.3e-17 93.6 159 44.7
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.7e-17 93.2 141 44.0
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.2e-17 92.8 138 50.0
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-17 92.8 66 68.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.9e-17 92.4 138 49.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.9e-17 92.4 145 48.3
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.8e-17 92.0 85 63.5
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.8e-17 92.0 161 41.6
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.5e-17 91.3 141 52.5
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-16 90.5 126 63.5
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.1e-16 90.5 141 51.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-16 89.7 138 54.3
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.5e-16 89.4 74 62.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.5e-16 89.4 123 59.3
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.5e-16 89.4 129 46.5
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.5e-16 89.4 129 46.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.2e-16 89.0 140 63.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.2e-16 88.6 72 63.9
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 9.4e-16 87.4 136 40.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.4e-16 87.4 144 51.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-15 86.7 116 58.6
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.7e-15 85.9 125 44.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-15 85.9 94 57.4
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.7e-15 85.1 138 57.2
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 4.7e-15 85.1 107 58.9
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 6.1e-15 84.7 88 54.5
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 6.1e-15 84.7 81 61.7
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-14 84.0 89 55.1
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.0e-14 84.0 133 42.9
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.0e-14 84.0 80 56.2
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.4e-14 83.6 90 52.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-14 83.6 133 42.9
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.3e-14 82.8 138 55.1
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.0e-14 82.4 72 62.5
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.0e-14 82.4 160 45.6
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.0e-14 82.4 66 71.2
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.9e-14 82.0 78 56.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.9e-14 82.0 128 45.3
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 5.2e-14 81.6 79 59.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-13 80.5 129 45.0
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.1e-13 80.5 129 38.8
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.5e-13 80.1 89 52.8
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.5e-13 80.1 81 50.6
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-13 80.1 155 57.4
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.0e-13 79.7 161 45.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.6e-13 79.3 69 66.7
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.3e-13 79.0 85 51.8
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.4e-13 78.6 89 53.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-13 78.6 89 51.7
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 4.4e-13 78.6 89 51.7
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 5.7e-13 78.2 124 54.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.7e-13 78.2 89 51.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.4e-13 77.8 76 56.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.4e-13 77.8 151 39.1
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 7.4e-13 77.8 85 51.8
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 9.7e-13 77.4 85 48.2
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.7e-12 76.6 88 52.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.7e-12 76.6 129 37.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.2e-12 76.3 81 50.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.8e-12 75.9 86 52.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.8e-12 75.9 86 52.3
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.7e-12 75.5 86 52.3
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.7e-12 75.5 121 43.8
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.8e-12 75.1 78 57.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.3e-12 74.7 80 52.5
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.3e-12 74.7 81 49.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.2e-12 74.3 93 51.6
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 1.1e-11 73.9 79 48.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.1e-11 73.9 84 47.6
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-11 73.2 88 45.5
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.8e-11 73.2 144 36.1
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.4e-11 72.8 142 49.3
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.4e-11 72.8 148 55.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.1e-11 72.4 127 46.5
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 5.3e-11 71.6 132 50.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 5.3e-11 71.6 77 49.4
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 7.0e-11 71.2 75 48.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 7.0e-11 71.2 138 44.9
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.6e-10 70.1 78 48.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 4.5e-10 68.6 68 54.4
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 4.5e-10 68.6 143 49.0
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.9e-10 68.2 72 55.6
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.9e-10 68.2 72 55.6
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-09 67.0 77 49.4
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.9e-09 65.9 142 35.9
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 3.8e-09 65.5 86 48.8
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.0e-09 65.1 126 36.5
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 5.0e-09 65.1 85 47.1
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 8.5e-09 64.3 133 38.3
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 8.5e-09 64.3 73 47.9
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 8.5e-09 64.3 127 37.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.1e-08 63.9 76 51.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.9e-08 63.2 90 45.6
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.9e-08 63.2 76 47.4
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 3.2e-08 62.4 87 43.7
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.5e-08 61.6 59 54.2
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 5.5e-08 61.6 73 43.8
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 5.5e-08 61.6 86 40.7
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.2e-08 61.2 67 58.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.6e-07 58.9 92 46.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 8.0e-07 57.8 66 50.0
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-06 56.6 82 42.7
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 3.0e-06 55.8 132 57.6
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 8.8e-06 54.3 67 50.7


User provided reference genes

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