Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.6e-77 293.1 328 100.0
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 4.2e-67 259.2 328 95.7
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.2e-61 241.1 319 94.0
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.3e-60 237.7 319 93.7
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.5e-60 235.0 319 93.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.5e-60 235.0 319 93.1
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.2e-58 231.1 329 91.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.6e-58 229.2 319 90.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.9e-58 228.4 329 90.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.9e-58 228.4 319 90.6
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.4e-57 227.6 317 90.5
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.9e-57 226.1 319 90.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 5.1e-57 225.7 323 90.4
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.7e-57 225.3 318 92.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 8.8e-57 224.9 326 89.3
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.0e-56 223.8 319 91.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.6e-56 223.4 329 90.6
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-56 223.4 319 90.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.6e-56 223.4 318 91.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.3e-56 223.0 318 89.6
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.7e-56 222.2 319 90.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.4e-56 221.9 320 91.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 7.4e-56 221.9 317 91.5
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 9.7e-56 221.5 319 89.0
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.3e-55 221.1 319 91.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.3e-55 221.1 319 91.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.3e-55 221.1 321 90.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-55 220.7 324 89.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-55 220.7 319 91.2
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.7e-55 220.7 321 91.6
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.7e-55 220.7 321 90.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.2e-55 220.3 319 90.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.2e-55 220.3 319 90.9
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.8e-55 219.9 319 90.3
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 322 90.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 322 90.7
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 3.7e-55 219.5 319 90.6
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 319 90.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 318 91.2
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 6.3e-55 218.8 318 90.9
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 321 91.3
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 6.3e-55 218.8 321 91.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 6.3e-55 218.8 319 90.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.2e-55 218.4 329 76.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 8.2e-55 218.4 317 91.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.2e-55 218.4 324 89.8
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 8.2e-55 218.4 321 85.7
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.1e-54 218.0 319 91.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 316 90.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.4e-54 217.6 324 89.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.4e-54 217.6 320 91.6
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.8e-54 217.2 319 90.9
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.8e-54 217.2 327 88.1
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-54 217.2 319 89.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.8e-54 217.2 326 80.7
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.1e-54 216.5 319 90.9
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.1e-54 216.5 320 89.1
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.1e-54 216.1 319 90.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 4.1e-54 216.1 319 90.0
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 4.1e-54 216.1 319 90.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.1e-54 216.1 319 90.3
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 6.9e-54 215.3 320 90.0
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 6.9e-54 215.3 240 93.8
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 9.1e-54 214.9 320 90.9
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 9.1e-54 214.9 320 90.9
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.5e-53 214.2 319 90.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.5e-53 214.2 328 88.4
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.5e-53 214.2 320 90.6
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.5e-53 214.2 319 90.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.6e-53 213.4 312 91.3
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.4e-53 213.0 361 68.4
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 3.4e-53 213.0 327 87.8
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.4e-53 213.0 322 89.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.4e-53 213.0 320 89.4
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 88.7
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 4.5e-53 212.6 317 89.9
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 90.3
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 4.5e-53 212.6 321 88.8
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 5.9e-53 212.2 320 88.1
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.7e-53 211.8 355 65.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.0e-52 211.5 340 61.5
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 87.9
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.7e-52 210.7 321 89.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 89.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 89.7
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 89.7
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.9e-52 209.9 323 89.5
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.9e-52 209.9 318 89.9
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.9e-52 209.9 317 90.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.8e-52 209.5 328 87.2
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.8e-52 209.5 239 91.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 6.5e-52 208.8 323 89.5
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.9e-51 207.2 251 86.1
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.5e-51 206.8 328 76.8
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 7.2e-51 205.3 324 85.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-50 204.5 335 74.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-50 204.1 319 88.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.7e-50 203.4 297 92.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 7.9e-50 201.8 319 88.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.0e-49 201.4 321 88.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.0e-49 201.4 323 87.6
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-49 201.1 319 88.4
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.4e-49 201.1 320 88.1
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.3e-49 200.3 327 78.9
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.2e-49 199.1 310 89.4
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.2e-49 199.1 327 87.8
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.2e-49 199.1 320 88.8
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 6.7e-49 198.7 320 88.4
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 8.8e-49 198.4 296 91.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.5e-48 197.6 246 72.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.5e-48 197.6 322 86.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.5e-48 197.6 327 84.1
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.6e-48 196.8 338 72.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.6e-48 196.8 321 87.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.7e-48 195.7 328 82.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-47 193.7 319 81.2
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-47 193.7 319 81.2
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.2e-47 191.8 322 84.8
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.2e-47 191.8 322 84.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 7.0e-46 188.7 316 86.4
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 9.1e-46 188.3 323 55.7
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.2e-45 188.0 316 86.1
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 4.5e-45 186.0 330 85.2
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.9e-45 185.7 324 83.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 5.9e-45 185.7 311 88.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.7e-45 185.3 339 83.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.7e-44 184.1 326 84.7
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 6.5e-44 182.2 331 81.0
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 8.5e-44 181.8 326 84.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.5e-43 181.0 331 82.5
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.5e-43 181.0 339 75.2
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-43 180.6 337 75.1
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 4.2e-43 179.5 335 80.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 5.5e-43 179.1 329 74.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.7e-42 176.8 326 71.2
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.7e-42 176.8 331 81.6
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.7e-42 176.0 323 69.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.0e-41 173.3 322 84.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-40 171.4 96 90.6
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.0e-40 170.6 322 83.9
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.3e-40 169.9 101 83.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 5.7e-40 169.1 100 84.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.7e-40 169.1 317 84.5
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-39 167.9 232 87.5
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-39 167.5 92 89.1
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-39 166.8 96 84.4
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.1e-38 164.9 95 84.2
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.4e-38 164.5 324 81.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.1e-38 163.3 91 86.8
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 7.0e-38 162.2 92 83.7
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.9e-37 159.1 99 80.8
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.9e-37 159.1 99 80.8
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 7.7e-37 158.7 101 79.2
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.2e-36 157.1 95 81.1
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.7e-34 150.2 253 77.1
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.4e-32 142.9 107 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 6.3e-31 139.0 324 77.2
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-29 134.4 75 84.0
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.9e-28 130.2 304 78.0
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.2e-27 125.6 290 76.6
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.6e-24 117.1 71 78.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.8e-20 103.2 89 61.8
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.0e-20 102.8 67 76.1
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-18 97.1 118 89.8
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.7e-18 96.3 122 54.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 4.0e-17 93.2 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.6e-16 90.5 62 64.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.5e-16 89.0 258 86.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.8e-16 88.6 241 71.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.9e-15 86.3 62 62.9
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.6e-13 81.3 55 72.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.0e-13 80.9 73 57.5
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 5.9e-13 79.3 46 82.6
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.3e-12 77.4 49 81.6
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.0e-12 76.3 43 86.0
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 5.0e-12 76.3 46 80.4
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.8e-08 62.8 95 45.3
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-07 61.2 32 87.5
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 42 71.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.9e-07 59.7 95 43.2


User provided reference genes

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