Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 3.4e-206 721.5 370 100.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.3e-177 625.2 363 88.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.7e-176 621.3 361 87.8
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 9.9e-166 587.0 338 87.3
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.0e-162 577.0 356 82.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-162 576.2 354 83.1
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.9e-162 575.1 356 82.6
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 6.6e-162 574.3 366 82.5
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 5.6e-161 571.2 355 82.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-160 569.7 364 81.6
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 4.8e-160 568.2 351 82.3
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.2e-160 567.8 383 77.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.0e-159 565.1 352 82.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.0e-159 565.1 341 83.6
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 9.0e-159 563.9 351 81.5
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.5e-158 563.1 360 80.3
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.6e-158 562.4 350 80.6
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-158 562.4 355 81.1
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 4.5e-158 561.6 380 77.1
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 7.6e-158 560.8 358 80.7
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.3e-157 560.1 334 85.0
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-157 560.1 325 86.5
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.9e-157 558.1 353 81.6
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-156 557.0 321 87.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-156 556.2 380 76.6
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 4.2e-156 555.1 341 81.5
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 9.3e-156 553.9 319 86.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 9.3e-156 553.9 328 83.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.6e-155 553.1 325 85.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.1e-155 552.7 355 80.0
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 3.5e-155 552.0 371 79.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 4.6e-155 551.6 351 80.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.8e-154 549.7 347 80.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.8e-154 549.7 347 80.1
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.3e-154 549.3 332 83.4
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 6.7e-154 547.7 354 79.7
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 2.5e-153 545.8 332 81.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 7.4e-153 544.3 340 80.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-152 543.1 354 77.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.8e-152 542.3 377 76.1
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 3.7e-152 542.0 362 76.5
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 4.8e-152 541.6 362 76.5
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 6.2e-152 541.2 361 76.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.1e-152 540.8 358 77.1
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.1e-151 540.4 341 80.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.1e-151 540.4 366 75.7
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.4e-151 539.3 361 78.9
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.0e-151 538.5 362 76.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.0e-151 538.5 362 75.4
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 6.9e-151 537.7 347 79.0
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 6.9e-151 537.7 337 80.4
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.2e-150 537.0 347 77.8
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-150 536.6 361 76.2
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.5e-150 536.6 361 76.2
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.5e-150 536.6 361 76.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-150 536.2 339 79.6
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-150 536.2 339 79.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.6e-150 535.8 342 79.5
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.5e-150 535.0 356 76.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.5e-150 535.0 356 76.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.5e-150 535.0 356 76.1
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 5.8e-150 534.6 342 77.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 7.6e-150 534.3 361 76.2
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.3e-149 533.5 328 81.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.3e-149 533.5 346 79.8
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.2e-149 532.7 344 79.9
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.9e-149 532.3 321 84.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.9e-149 531.6 353 76.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 8.4e-149 530.8 361 75.1
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.4e-148 530.0 363 75.8
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.4e-148 530.0 361 75.6
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.4e-148 530.0 361 75.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.4e-148 530.0 349 76.8
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 9.3e-148 527.3 362 75.4
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.1e-147 526.2 378 75.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 3.5e-147 525.4 328 79.6
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 7.9e-147 524.2 323 82.0
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.3e-146 523.5 351 77.2
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.3e-146 522.7 291 89.7
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 3.9e-146 521.9 326 79.8
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.1e-146 521.5 347 76.7
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 6.7e-146 521.2 351 76.9
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 3.3e-145 518.8 350 75.1
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 5.7e-145 518.1 355 74.4
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.3e-144 516.9 362 74.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.1e-143 513.8 324 79.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-143 513.5 327 78.0
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.2e-142 510.4 329 78.7
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 5.0e-141 505.0 358 73.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.4e-141 504.2 338 76.9
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.4e-140 503.4 336 75.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 5.5e-140 501.5 323 76.2
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.6e-139 500.0 336 77.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 4.6e-139 498.4 330 74.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 6.1e-139 498.0 295 81.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-139 498.0 332 78.0
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.8e-138 496.5 329 77.8
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-137 493.4 319 79.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 2.8e-136 489.2 345 73.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 6.3e-136 488.0 333 74.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.4e-135 486.9 387 67.7
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 5.3e-135 485.0 309 78.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.3e-133 480.3 300 78.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.0e-133 478.4 312 76.3
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 4.2e-132 475.3 324 76.9
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 7.2e-132 474.6 337 71.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.8e-130 469.9 362 72.1
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.3e-130 469.5 338 69.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 4.3e-129 465.3 295 79.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 8.2e-128 461.1 348 71.0
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 8.2e-128 461.1 300 79.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.4e-127 459.5 309 75.1
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 6.9e-127 458.0 346 68.5
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.0e-126 456.4 306 77.1
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.5e-126 455.3 323 69.7
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.3e-125 453.8 369 67.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 6.5e-125 451.4 267 85.8
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.0e-122 444.1 336 67.9
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 3.3e-121 439.1 370 64.1
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.1e-119 432.2 320 68.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-119 431.4 362 63.3
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-119 431.4 362 63.3
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.2e-112 409.8 361 62.0
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 4.1e-111 405.6 245 79.2
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.2e-109 399.8 242 82.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 6.5e-109 398.3 234 85.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 8.5e-109 397.9 359 61.0
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.5e-109 397.9 295 69.2
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.7e-107 392.9 319 63.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.4e-103 380.6 295 68.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 5.2e-98 362.1 228 78.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.7e-94 349.7 227 76.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.0e-90 337.8 217 76.0
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.7e-88 329.3 360 52.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.1e-87 325.9 242 72.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.7e-77 293.9 197 77.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.5e-76 288.1 262 64.1
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 7.3e-68 261.9 181 75.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.4e-64 248.8 175 70.3
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 5.4e-63 245.7 167 79.6
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-41 174.9 134 67.9
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-41 174.1 125 67.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-41 174.1 134 67.2
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.3e-39 165.2 110 75.5
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.8e-35 152.9 82 85.4
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-34 150.2 117 75.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-32 144.1 139 56.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.9e-32 143.7 133 61.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 9.3e-31 138.7 132 62.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.6e-30 137.9 91 74.7
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.4e-26 124.0 88 76.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.2e-25 121.7 267 30.0
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.4e-24 115.5 86 67.4
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.7e-22 110.5 95 58.9
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.7e-20 102.8 79 73.4
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-18 97.1 56 73.2
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.1e-18 96.7 102 52.0
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-16 91.7 73 71.2
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.6e-14 83.2 52 71.2


User provided reference genes

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