Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-162 575.9 320 100.0
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-122 443.0 320 80.3
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 5.5e-112 408.3 331 75.8
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.9e-110 402.1 331 74.6
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-108 396.4 324 74.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.1e-107 392.5 330 73.0
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 5.3e-107 391.7 323 73.4
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 3.4e-106 389.0 323 73.7
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.4e-106 389.0 325 74.2
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.4e-106 389.0 325 74.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.9e-105 386.0 322 72.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.9e-105 385.2 325 74.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-104 384.0 325 73.5
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.2e-104 382.1 329 72.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.3e-102 376.3 319 71.8
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-101 374.0 323 67.5
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.8e-100 369.4 322 63.7
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.1e-99 365.9 323 71.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.2e-97 359.8 332 70.2
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 6.3e-92 341.7 324 69.1
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.1e-91 339.3 329 59.0
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 2.5e-88 329.7 323 66.6
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.8e-86 323.6 340 64.1
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 5.3e-83 312.0 321 66.7
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.9e-82 308.5 329 67.8
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 5.0e-81 305.4 322 64.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.6e-79 299.3 329 63.5
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.4e-78 297.4 255 62.0
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 3.9e-78 295.8 324 62.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.3e-76 290.8 344 60.8
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.4e-75 286.6 322 62.4
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 5.3e-75 285.4 326 59.5
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 5.0e-73 278.9 344 61.9
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.7e-71 273.1 322 59.9
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 3.6e-71 272.7 350 58.6
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 8.0e-71 271.6 341 58.1
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-70 270.8 340 51.5
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.0e-70 269.6 331 55.0
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 5.2e-70 268.9 333 58.0
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 7.5e-69 265.0 352 59.1
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.2e-68 263.5 264 59.1
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.4e-67 260.0 323 57.9
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 4.5e-66 255.8 326 59.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.0e-65 254.6 331 57.7
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.1e-64 251.1 320 58.4
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.5e-64 250.0 352 56.2
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.0e-62 244.6 312 50.0
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.3e-62 243.4 312 57.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-61 241.1 314 58.0
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 5.7e-61 238.8 357 53.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.8e-60 236.5 330 57.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.8e-60 235.7 323 46.1
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.1e-59 234.6 344 56.1
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.1e-59 231.5 323 46.1
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 7.7e-58 228.4 295 53.6
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.0e-57 228.0 221 68.8
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.3e-57 227.6 333 56.8
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.0e-57 225.7 340 55.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.2e-56 223.0 333 56.8
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 9.5e-56 221.5 333 46.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 9.5e-56 221.5 336 49.1
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-55 219.9 324 56.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.8e-55 219.9 324 56.2
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 4.7e-55 219.2 320 48.8
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 6.1e-55 218.8 341 54.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.2e-54 215.7 303 55.4
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 5.7e-53 212.2 317 51.1
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 5.7e-53 212.2 317 51.1
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.8e-53 211.5 346 43.6
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.8e-53 211.5 345 53.3
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.3e-52 211.1 330 47.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-52 210.7 344 53.8
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.8e-52 209.9 351 42.2
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 6.3e-52 208.8 355 42.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.1e-51 208.0 346 51.4
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.4e-51 207.6 341 54.0
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.8e-51 207.2 343 53.6
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.8e-51 207.2 343 53.6
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 5.4e-51 205.7 338 46.4
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.0e-50 203.8 329 53.5
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.0e-50 203.8 303 51.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.3e-49 200.3 350 43.4
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.6e-49 198.7 349 43.3
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 8.6e-49 198.4 335 48.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.1e-47 193.7 346 51.7
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.4e-46 191.0 336 47.0
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.4e-45 186.0 311 52.7
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 9.8e-45 184.9 383 46.2
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.2e-44 183.7 318 51.9
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.8e-43 180.6 187 59.4
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.7e-42 176.8 344 44.2
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.8e-42 175.3 213 64.3
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 7.8e-42 175.3 382 45.0
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 3.0e-41 173.3 353 40.8
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 4.3e-40 169.5 319 42.0
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 4.7e-39 166.0 321 48.9
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.1e-38 163.3 341 46.6
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 8.9e-38 161.8 307 42.7
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 7.5e-37 158.7 330 42.7
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.7e-36 157.5 304 39.8
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.7e-36 157.5 329 41.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.4e-36 155.6 348 42.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.4e-36 155.6 348 42.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.4e-36 155.6 348 42.8
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.9e-35 154.1 345 43.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.4e-35 152.5 332 40.4
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 6.0e-34 149.1 329 43.5
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.0e-33 148.3 340 45.9
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.0e-33 146.0 337 38.0
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 5.0e-33 146.0 336 41.1
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 5.6e-32 142.5 351 43.3
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.6e-31 141.0 345 40.6
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.6e-31 141.0 352 41.8
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.6e-31 141.0 341 38.1
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-31 140.6 349 40.7
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.1e-31 140.6 334 41.0
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.8e-31 140.2 350 42.0
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.8e-31 140.2 350 42.0
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.3e-30 137.1 353 41.6
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 4.0e-30 136.3 346 42.5
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.2e-30 136.0 329 36.8
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.2e-30 136.0 347 40.9
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 8.9e-30 135.2 345 40.3
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.2e-29 134.8 348 40.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 3.4e-29 133.3 346 40.8
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.4e-29 132.9 325 36.3
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 5.8e-29 132.5 354 40.4
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.9e-28 130.2 336 37.5
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.7e-28 129.8 341 41.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 8.3e-28 128.6 348 38.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.1e-27 128.3 279 47.3
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.4e-27 127.9 348 38.8
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.4e-27 127.1 399 40.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 7.1e-27 125.6 338 37.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 9.2e-27 125.2 297 45.1
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.2e-26 124.8 318 44.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 2.3e-25 120.6 345 42.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.1e-24 118.2 348 37.9
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 4.7e-23 112.8 317 34.7
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.4e-22 110.5 315 34.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 7.6e-21 105.5 339 36.6
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 6.4e-20 102.4 320 36.2
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.4e-19 101.3 317 36.0
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.2e-18 98.2 115 51.3
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-17 94.7 112 50.9
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 4.3e-16 89.7 313 37.1
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.2e-15 88.2 300 31.7
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 9.0e-14 82.0 273 31.5
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-13 81.3 275 31.3
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-12 78.2 147 42.2
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 8.4e-12 75.5 309 29.8
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 6.0e-10 69.3 43 74.4
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.8e-10 68.9 70 54.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 1.1e-08 65.1 292 29.5
Carub.0003s1356 Capsella rubella HOM05D001488 ORTHO05D001456 3.6e-07 60.1 222 29.3
A05p35430 Brassica napus HOM05D001488 ORTHO05D001456 1.4e-06 58.2 268 33.2
BraA05t22353Z Brassica rapa HOM05D001488 ORTHO05D001456 1.4e-06 58.2 268 33.2
BcaC05g29134 Brassica carinata HOM05D001488 ORTHO05D001456 1.8e-06 57.8 260 33.8
C05p53720 Brassica napus HOM05D001488 ORTHO05D001456 1.8e-06 57.8 260 33.8
BolC5t34042H Brassica oleracea HOM05D001488 ORTHO05D001456 1.8e-06 57.8 260 33.8
Oeu007567.1 Olea europaea HOM05D001488 ORTHO05D001456 1.8e-06 57.8 239 29.3
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.1e-06 57.0 175 32.0
Duzib168G0244 Durio zibethinus HOM05D001488 ORTHO05D001456 9.0e-06 55.5 238 27.3
Duzib187G1785 Durio zibethinus HOM05D001488 ORTHO05D001456 9.0e-06 55.5 233 31.3


User provided reference genes

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