Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 0.0e+00 1271.9 671 100.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-141 507.7 718 47.8
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-141 507.7 718 47.8
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 5.8e-132 475.7 741 46.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.4e-119 432.2 720 43.2
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.2e-113 414.8 741 40.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 9.1e-109 398.7 731 40.1
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.3e-107 394.8 701 40.8
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 3.2e-106 390.2 733 41.1
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.4e-103 379.0 683 40.7
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.2e-100 371.7 690 41.3
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.0e-99 368.6 684 41.7
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.6e-95 354.0 753 38.5
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.7e-95 352.1 684 39.6
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 6.3e-94 349.4 694 41.1
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 5.9e-92 342.8 736 37.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 9.4e-90 335.5 680 38.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.2e-89 335.1 750 36.4
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.4e-87 326.6 726 38.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.4e-87 326.6 684 38.0
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 9.1e-85 318.9 688 37.5
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.0e-83 313.2 750 36.4
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 9.4e-82 308.9 665 36.8
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.0e-80 303.9 677 39.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.8e-80 302.8 786 36.1
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.7e-79 299.7 712 37.6
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.8e-78 297.4 695 37.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.4e-77 295.0 679 36.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 4.5e-76 290.0 681 37.7
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 6.6e-75 286.2 731 34.5
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-74 285.4 691 34.9
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.3e-74 283.9 761 35.6
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.2e-73 282.0 674 37.4
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.3e-72 277.7 663 36.8
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 4.9e-70 270.0 684 34.8
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.1e-69 268.9 663 36.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.8e-69 268.1 656 38.0
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.2e-68 265.4 663 36.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.3e-67 261.2 709 35.1
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.9e-66 258.1 677 33.1
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 3.6e-65 253.8 667 36.1
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 3.6e-65 253.8 701 34.4
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.3e-64 251.1 661 34.9
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 4.0e-64 250.4 666 33.8
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.7e-62 245.0 742 32.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.9e-62 244.2 686 34.3
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 6.4e-62 243.0 708 33.1
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.0e-61 239.6 717 33.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 6.0e-60 236.5 674 33.2
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.9e-58 231.5 674 33.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 2.5e-58 231.1 669 34.4
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 5.6e-58 229.9 681 33.8
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.6e-58 229.9 673 33.4
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 6.2e-57 226.5 673 33.1
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 1.1e-56 225.7 663 35.3
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.1e-56 225.7 672 33.5
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.4e-56 225.3 787 29.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-56 224.6 217 61.3
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 8.9e-56 222.6 502 37.1
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 8.9e-56 222.6 664 32.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.5e-55 221.9 663 33.6
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.5e-55 221.9 675 31.7
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.7e-54 217.2 669 32.4
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.1e-53 215.7 693 32.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.2e-53 214.2 164 69.5
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 4.1e-53 213.8 669 32.7
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.7e-52 211.1 165 70.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.0e-51 209.1 678 32.6
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 2.3e-51 208.0 168 72.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 6.6e-51 206.5 167 68.9
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 8.6e-51 206.1 167 68.9
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.1e-50 205.7 185 65.9
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.9e-50 204.9 178 66.9
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.3e-50 204.1 673 32.8
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.3e-50 203.8 182 66.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 5.6e-50 203.4 596 32.4
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-50 203.4 673 32.1
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 7.3e-50 203.0 646 31.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.5e-50 202.6 530 36.6
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 6.2e-49 199.9 219 58.0
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.3e-48 198.0 675 31.4
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.5e-47 195.3 673 30.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.6e-47 193.0 680 32.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 4.9e-46 190.3 202 55.9
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.1e-45 189.1 653 28.6
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.9e-45 188.3 695 30.6
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 4.1e-45 187.2 661 31.0
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.4e-45 186.8 681 32.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.2e-45 186.0 168 64.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.1e-43 180.3 178 59.6
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.5e-42 178.7 691 30.7
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.9e-42 178.3 645 30.2
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.1e-41 174.9 642 28.2
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 3.6e-41 174.1 137 70.1
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 3.1e-40 171.0 674 30.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 5.2e-40 170.2 694 29.8
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.9e-38 164.5 661 29.5
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.8e-38 164.1 117 73.5
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 3.2e-37 161.0 153 62.1
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 4.2e-37 160.6 675 28.6
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.7e-36 157.9 680 27.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 2.7e-36 157.9 172 57.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 4.6e-36 157.1 169 58.6
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.0e-36 156.8 171 55.0
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 6.0e-36 156.8 691 27.9
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.8e-36 156.4 161 55.3
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.0e-35 156.0 677 28.8
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.5e-34 152.1 162 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.9e-34 151.8 186 50.0
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.3e-34 150.6 408 30.9
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.6e-34 150.2 144 62.5
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 7.3e-34 149.8 182 50.5
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.8e-33 147.9 651 27.8
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.8e-33 147.9 177 54.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.8e-32 145.2 167 53.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.0e-32 142.9 162 53.1
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-31 142.5 227 44.9
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.7e-30 138.7 659 27.0
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.1e-29 136.0 158 52.5
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.4e-29 133.7 576 27.3
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.5e-28 131.0 238 41.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 6.0e-28 130.2 248 42.7
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.9e-28 129.8 95 68.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.9e-28 129.8 252 40.5
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.0e-27 129.4 195 49.2
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 5.1e-27 127.1 524 30.3
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-26 125.6 142 56.3
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-26 125.2 131 55.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 4.3e-26 124.0 582 27.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.6e-25 120.9 263 38.4
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 8.1e-25 119.8 101 65.3
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.1e-24 117.9 72 81.9
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 4.0e-24 117.5 537 28.3
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.0e-24 117.5 89 70.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 6.9e-24 116.7 87 70.1
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.5e-23 115.5 173 43.9
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 4.5e-23 114.0 674 25.2
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 4.5e-23 114.0 133 52.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 5.8e-23 113.6 85 69.4
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.5e-18 99.0 660 23.9
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 7.6e-15 86.7 547 25.8
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 6.5e-14 83.6 74 66.2
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.4e-13 82.4 124 43.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.5e-12 77.8 161 36.6
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.0e-06 59.7 35 88.6


User provided reference genes

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