Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 1.4e-103 379.8 209 100.0
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 7.0e-68 261.2 205 69.8
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.1e-63 247.3 205 62.0
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 4.0e-63 245.4 205 62.0
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 6.8e-63 244.6 201 68.7
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 6.8e-63 244.6 205 62.9
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 3.4e-62 242.3 206 62.6
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 7.5e-62 241.1 201 68.7
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 9.8e-62 240.7 205 65.9
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 1.4e-60 236.9 204 65.2
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 9.2e-60 234.2 204 64.2
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 3.5e-59 232.3 206 61.2
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.6e-58 228.0 218 57.3
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 9.5e-57 224.2 204 64.2
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 1.6e-56 223.4 201 64.2
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 6.2e-56 221.5 200 62.0
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 4.0e-55 218.8 201 62.2
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 2.0e-54 216.5 205 61.0
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 3.4e-54 215.7 205 59.0
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 1.3e-53 213.8 197 64.5
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.7e-53 213.4 201 59.7
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 2.4e-52 209.5 200 57.5
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 5.4e-52 208.4 202 56.9
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 5.4e-52 208.4 202 57.4
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 5.4e-52 208.4 205 57.1
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 3.5e-51 205.7 172 66.3
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 4.6e-51 205.3 172 65.7
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 4.6e-51 205.3 201 57.7
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.3e-50 203.8 172 65.7
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 1.7e-50 203.4 172 65.1
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 2.3e-50 203.0 201 56.2
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 5.1e-50 201.8 201 57.7
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 2.5e-49 199.5 172 65.7
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 5.6e-49 198.4 172 64.5
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 1.6e-48 196.8 172 61.6
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 8.9e-47 191.0 232 50.4
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 1.3e-45 187.2 201 56.7
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.3e-45 187.2 204 52.0
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 2.2e-45 186.4 201 55.2
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 2.2e-45 186.4 162 62.3
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 8.4e-45 184.5 167 61.7
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 5.4e-44 181.8 172 58.1
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 7.1e-44 181.4 167 58.7
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 1.6e-43 180.3 201 56.2
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 2.7e-43 179.5 167 58.7
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 7.8e-43 177.9 204 50.0
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 3.9e-42 175.6 178 53.9
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 5.1e-42 175.3 201 52.7
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 2.5e-41 172.9 201 54.7
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 5.6e-41 171.8 203 53.7
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 1.3e-40 170.6 172 57.6
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 8.1e-40 167.9 178 54.5
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 5.3e-39 165.2 191 52.9
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 2.6e-38 162.9 220 45.5
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 4.4e-38 162.2 201 50.2
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 1.3e-37 160.6 236 47.0
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 5.4e-36 155.2 202 50.0
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 6.0e-35 151.8 167 53.3
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 6.0e-35 151.8 167 53.3
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 1.0e-34 151.0 181 50.8
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 2.3e-34 149.8 172 52.9
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 1.3e-32 144.1 167 49.7
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 1.3e-32 144.1 167 49.7
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.6e-32 143.7 167 52.1
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 1.6e-32 143.7 179 50.8
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 4.8e-32 142.1 167 50.9
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 1.1e-31 141.0 167 48.5
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 1.1e-31 141.0 167 48.5
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 1.1e-31 141.0 167 48.5
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 1.9e-28 130.2 266 38.3
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 2.1e-27 126.7 106 66.0
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 7.9e-27 124.8 124 56.5
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 1.8e-26 123.6 167 47.3
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 3.0e-26 122.9 110 64.5
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 4.3e-25 119.0 201 38.8
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 3.1e-23 112.8 106 61.3
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 1.2e-22 110.9 103 60.2
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.5e-22 109.0 93 62.4
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.5e-22 109.0 93 62.4
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.2e-20 102.8 73 71.2
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.2e-20 102.8 73 71.2
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 7.1e-20 101.7 200 37.5
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 7.9e-19 98.2 73 74.0
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 3.7e-16 89.4 108 49.1
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 3.7e-16 89.4 58 77.6
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 3.1e-15 86.3 108 50.0
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 2.6e-14 83.2 138 39.9
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 1.3e-10 70.9 94 45.7


User provided reference genes

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