Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 5.1e-60 235.0 199 100.0
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.2e-54 214.5 200 78.0
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 5.2e-52 208.4 200 91.0
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.3e-51 205.7 200 90.0
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 5.7e-51 204.9 200 84.5
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.7e-50 203.4 200 83.5
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 2.8e-50 202.6 200 83.5
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.7e-50 202.2 200 85.5
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.8e-50 201.8 200 84.5
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.1e-49 200.7 112 92.0
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.1e-49 200.7 202 87.1
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.4e-49 199.5 112 90.2
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.4e-49 199.5 201 83.1
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.4e-49 199.5 112 91.1
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.4e-49 199.5 112 91.1
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 2.4e-49 199.5 112 90.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 3.1e-49 199.1 110 89.1
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 4.1e-49 198.7 112 91.1
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 9.1e-49 197.6 111 90.1
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.0e-48 196.4 200 73.5
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.6e-48 196.1 202 88.6
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.6e-48 196.1 111 89.2
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.9e-48 194.9 200 83.5
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.9e-48 194.9 200 84.0
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 5.9e-48 194.9 202 88.6
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 5.9e-48 194.9 200 86.5
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.0e-47 194.1 112 88.4
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.2e-47 193.0 201 87.1
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.9e-47 192.6 207 86.5
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.0e-47 191.8 109 87.2
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.5e-47 191.4 108 88.0
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 1.1e-46 190.7 112 87.5
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.1e-46 190.7 200 73.5
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.5e-46 190.3 111 86.5
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.9e-46 189.9 108 86.1
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.9e-46 189.9 200 82.0
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.9e-46 189.9 200 85.0
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.5e-46 189.5 112 83.9
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 2.5e-46 189.5 112 83.9
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 3.2e-46 189.1 200 80.5
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.2e-46 189.1 202 80.2
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 3.2e-46 189.1 112 84.8
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.2e-46 188.0 200 87.0
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 7.2e-46 188.0 106 86.8
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 9.4e-46 187.6 113 84.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.2e-45 187.2 202 86.1
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.6e-45 186.8 112 83.9
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.1e-45 186.4 111 83.8
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.7e-45 186.0 112 82.1
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 3.6e-45 185.7 112 83.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 3.6e-45 185.7 108 87.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.7e-45 185.3 113 85.0
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.1e-45 184.9 109 85.3
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 6.1e-45 184.9 108 85.2
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 8.0e-45 184.5 102 87.3
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 1.0e-44 184.1 110 85.5
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.0e-44 184.1 111 79.3
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.4e-44 183.7 106 84.0
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.4e-44 183.7 201 84.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 112 83.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.8e-44 183.3 102 87.3
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.3e-44 183.0 206 80.6
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.3e-44 183.0 103 88.3
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.0e-44 182.6 108 83.3
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.0e-44 182.2 199 85.9
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.2e-44 181.8 103 90.3
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 5.2e-44 181.8 103 86.4
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 6.7e-44 181.4 109 84.4
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 6.7e-44 181.4 103 86.4
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 6.7e-44 181.4 103 86.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.7e-44 181.4 111 82.9
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 8.8e-44 181.0 103 86.4
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 112 79.5
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 2.0e-43 179.9 107 83.2
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 2.0e-43 179.9 115 83.5
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.3e-43 179.1 199 85.4
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 4.4e-43 178.7 136 72.8
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 7.5e-43 177.9 108 80.6
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 7.5e-43 177.9 103 83.5
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 9.7e-43 177.6 102 84.3
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 9.7e-43 177.6 106 84.0
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 86.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.3e-42 177.2 199 74.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.7e-42 176.8 108 78.7
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.7e-42 176.8 103 84.5
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.2e-42 176.4 108 78.7
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.2e-42 176.4 112 80.4
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.8e-42 176.0 199 85.4
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 84.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 3.7e-42 175.6 108 78.7
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.7e-42 175.6 101 86.1
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.7e-42 175.6 101 86.1
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 3.7e-42 175.6 101 86.1
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.8e-42 175.3 108 78.7
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 6.3e-42 174.9 108 77.8
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 6.3e-42 174.9 108 77.8
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 8.2e-42 174.5 108 77.8
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.1e-41 174.1 108 77.8
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-41 174.1 201 71.1
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.1e-41 174.1 202 80.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.8e-41 173.3 202 81.2
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 3.1e-41 172.6 108 76.9
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.5e-40 169.1 205 74.1
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 5.9e-40 168.3 103 80.6
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-39 167.2 113 74.3
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.2e-39 166.4 140 67.9
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 2.2e-39 166.4 105 78.1
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 2.2e-39 166.4 105 78.1
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 2.2e-39 166.4 105 78.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 8.5e-39 164.5 102 81.4
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 8.5e-39 164.5 105 80.0
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.5e-38 163.7 110 73.6
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.5e-38 163.7 110 73.6
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.1e-37 159.8 117 72.6
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.7e-37 159.5 115 73.0
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 2.7e-37 159.5 111 74.8
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 6.8e-36 154.8 111 71.2
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.7e-34 150.2 106 73.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 6.3e-34 148.3 164 53.7
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.4e-33 147.1 188 48.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 4.1e-33 145.6 105 70.5
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 5.9e-32 141.7 80 92.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 8.5e-31 137.9 83 83.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.9e-30 136.7 191 45.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 4.2e-30 135.6 81 84.0
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.6e-29 132.5 124 62.1
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.0e-28 131.0 71 88.7
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.0e-28 131.0 80 82.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.7e-26 123.6 225 38.7
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.9e-26 122.1 79 74.7
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 4.1e-25 119.0 79 73.4
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-25 119.0 65 87.7
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-25 119.0 65 87.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 9.2e-25 117.9 75 78.7
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.1e-22 110.9 71 74.6
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-20 104.0 170 66.5
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 4.0e-20 102.4 71 70.4
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.2e-19 100.9 111 58.6
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 3.4e-19 99.4 139 51.1
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 4.4e-19 99.0 75 66.7
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 2.2e-18 96.7 82 61.0
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 6.4e-18 95.1 139 89.9
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.4e-17 94.0 111 48.6
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 3.5e-16 89.4 63 69.8
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 5.9e-16 88.6 252 48.8
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.9e-14 83.6 170 34.7
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.9e-14 83.6 170 34.7
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 5.6e-14 82.0 79 55.7
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 8.0e-13 78.2 49 83.7
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.4e-12 77.4 137 83.9
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 8.9e-12 74.7 93 51.6
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.2e-10 70.1 34 88.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-09 66.2 138 76.8
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.7e-08 63.2 49 71.4
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.7e-07 60.5 37 83.8
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 2.3e-07 60.1 136 58.8
MCO01G557 Micromonas commoda HOM05D004131 ORTHO05D004778 1.1e-06 57.8 75 45.3
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-06 57.4 35 82.9
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 3.3e-06 56.2 37 78.4
Cpa.g.c34531 Carica papaya HOM05D004131 ORTHO05D004778 4.3e-06 55.8 29 93.1
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 5.6e-06 55.5 35 77.1


User provided reference genes

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