Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 2.3e-221 771.9 388 100.0
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 3.1e-162 575.5 447 69.8
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.0e-160 570.5 424 71.2
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 6.5e-160 567.8 377 75.3
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.1e-159 567.0 424 70.5
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.5e-159 565.8 423 70.7
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 2.7e-158 562.4 389 73.8
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 6.1e-158 561.2 425 69.4
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.0e-157 560.5 378 75.1
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.5e-156 556.6 395 72.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 9.7e-156 553.9 425 69.2
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.7e-155 553.1 391 73.7
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.2e-155 552.7 402 70.6
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.2e-155 552.7 402 71.1
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.7e-155 552.0 385 73.2
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.7e-155 552.0 392 73.2
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 6.3e-155 551.2 390 73.3
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 8.2e-155 550.8 384 72.9
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 8.2e-155 550.8 428 68.0
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 8.2e-155 550.8 413 69.0
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.8e-154 549.7 393 72.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.4e-154 549.3 381 73.8
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 4.1e-154 548.5 402 70.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.2e-153 547.0 380 74.2
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.6e-153 546.6 376 74.2
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 1.6e-153 546.6 378 74.1
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.6e-153 546.6 386 73.3
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.0e-153 546.2 406 69.0
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 4.5e-153 545.0 389 72.5
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 7.7e-153 544.3 402 70.4
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 7.7e-153 544.3 385 73.2
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.0e-152 543.9 424 67.2
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.2e-152 542.7 388 71.9
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-152 542.7 407 70.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.8e-152 542.0 408 68.9
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 8.5e-152 540.8 388 71.4
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.5e-151 540.0 383 71.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.5e-151 540.0 402 69.9
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 5.5e-151 538.1 392 70.2
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.7e-150 535.8 404 69.3
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 6.1e-150 534.6 385 70.6
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.0e-149 533.9 391 69.8
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 3.0e-149 532.3 408 67.6
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 5.2e-149 531.6 430 64.9
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.8e-149 531.2 406 68.0
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 2.0e-148 529.6 402 68.7
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.6e-148 529.3 408 67.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.4e-148 528.9 408 67.4
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 7.5e-148 527.7 395 68.4
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.2e-147 526.2 400 68.2
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 2.8e-147 525.8 395 68.1
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.8e-147 525.0 421 65.8
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 4.1e-146 521.9 400 67.8
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.2e-145 520.4 391 68.0
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 7.7e-145 517.7 404 66.8
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.0e-144 517.3 385 70.6
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 1.3e-144 516.9 402 66.4
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 3.8e-144 515.4 377 69.8
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 5.5e-143 511.5 404 66.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.2e-142 510.4 413 64.4
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 9.8e-140 500.7 370 69.7
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.3e-139 500.4 374 68.7
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.2e-139 499.6 408 65.2
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-139 499.6 386 69.2
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.3e-136 489.6 403 62.8
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 5.0e-136 488.4 381 66.9
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.6e-136 487.6 373 64.9
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 8.6e-136 487.6 372 66.9
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.1e-135 487.3 410 62.4
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.9e-135 486.5 383 67.4
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.6e-135 485.0 392 65.8
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.6e-135 485.0 392 65.8
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.2e-134 483.8 369 66.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.6e-134 483.4 369 66.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 2.1e-134 483.0 369 65.9
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.1e-134 483.0 369 65.9
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 4.7e-134 481.9 390 65.4
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.0e-133 480.7 376 67.6
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.4e-133 480.3 376 66.5
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-131 473.8 374 64.4
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.9e-131 472.6 375 63.5
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 6.4e-131 471.5 374 63.6
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 6.4e-131 471.5 376 63.8
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 8.3e-131 471.1 387 62.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.4e-130 469.5 359 68.2
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-129 466.5 379 63.6
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 6.6e-128 461.5 384 61.5
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 7.3e-127 458.0 354 65.5
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-123 447.2 360 63.9
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 6.0e-121 438.3 350 65.1
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-119 433.7 398 58.3
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.2e-118 430.6 386 58.0
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 5.2e-117 425.2 373 57.1
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-116 424.1 390 56.4
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.1e-114 414.8 304 70.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 7.1e-114 414.8 335 63.6
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 7.8e-113 411.4 394 54.8
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.6e-110 403.7 390 52.6
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 1.1e-109 401.0 387 53.2
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.0e-109 399.1 390 52.3
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.5e-108 397.1 332 63.3
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-107 394.0 356 58.1
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.1e-105 386.7 394 52.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 3.0e-104 382.9 354 58.8
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 5.1e-104 382.1 425 49.2
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.1e-103 380.9 318 61.9
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 9.6e-103 377.9 378 51.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.1e-101 374.4 374 52.4
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.3e-99 367.5 414 47.1
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 7.1e-98 361.7 351 57.0
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 7.8e-97 358.2 354 54.5
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 7.8e-97 358.2 367 51.8
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 3.0e-96 356.3 227 75.8
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 3.3e-95 352.8 227 75.3
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 7.3e-95 351.7 382 51.3
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 3.6e-94 349.4 349 53.6
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-92 343.6 225 74.7
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.6e-92 343.2 227 70.9
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.2e-89 334.3 286 65.0
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 3.5e-89 332.8 351 50.7
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.1e-73 280.4 352 46.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 9.0e-69 265.0 204 69.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-58 231.5 165 72.1
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 3.6e-49 199.9 157 65.0
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.1e-45 186.4 112 78.6
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 5.3e-45 186.0 111 82.0
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 7.0e-45 185.7 363 36.9
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 7.0e-45 185.7 190 56.8
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 1.6e-44 184.5 329 36.5
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 7.7e-44 182.2 114 78.1
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 1.3e-43 181.4 114 77.2
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.5e-43 178.7 128 71.1
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-40 171.8 111 77.5
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 1.2e-39 168.3 103 80.6
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 7.5e-39 165.6 187 49.2
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 1.0e-35 155.2 116 68.1
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 8.5e-35 152.1 112 67.9
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 5.0e-27 126.3 77 76.6
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 6.8e-24 115.9 168 44.0
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 6.8e-24 115.9 117 47.0
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.5e-23 114.8 71 77.5
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.4e-21 108.2 111 50.5
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 5.0e-19 99.8 67 74.6
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.6e-19 99.0 63 79.4
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 8.6e-19 99.0 331 26.3
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 3.3e-18 97.1 349 25.8
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.2e-17 95.1 73 64.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-17 94.7 53 86.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.1e-16 90.5 58 70.7
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 8.9e-16 89.0 96 54.2
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 8.9e-16 89.0 59 72.9
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-15 88.6 67 68.7
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 8.3e-14 82.4 66 63.6
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 1.4e-13 81.6 76 55.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 2.5e-10 70.9 117 41.0
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 7.3e-10 69.3 64 50.0
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 2.1e-09 67.8 52 61.5
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 1.1e-08 65.5 66 50.0
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 1.8e-08 64.7 42 69.0
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.5e-07 59.3 37 78.4
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 7.5e-07 59.3 38 68.4
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 2.2e-06 57.8 38 68.4
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 2.2e-06 57.8 38 68.4
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 2.2e-06 57.8 38 68.4
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 2.2e-06 57.8 38 68.4
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 3.7e-06 57.0 52 51.9
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 3.7e-06 57.0 52 51.9
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 3.7e-06 57.0 52 51.9
arahy.Tifrunner.gnm1.ann1.4RSR2L Arachis hypogaea HOM05D004238 ORTHO05D014893 6.4e-06 56.2 46 58.7


User provided reference genes

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