Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 0.0e+00 1231.1 681 100.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 0.0e+00 1118.6 681 90.0
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 9.3e-311 1069.7 682 85.9
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.5e-310 1067.8 686 86.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.6e-308 1060.4 680 87.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.8e-307 1057.4 685 84.1
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.4e-306 1055.0 685 84.1
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.1e-306 1054.7 680 86.9
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 6.9e-306 1053.5 684 84.2
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.5e-305 1052.4 680 86.3
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.4e-305 1051.2 684 86.4
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.2e-304 1048.5 684 84.8
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.8e-304 1047.7 685 84.7
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 6.4e-304 1047.0 687 85.4
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.1e-303 1046.2 685 84.7
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.0e-301 1039.6 685 82.8
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.9e-300 1035.4 689 84.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 7.4e-300 1033.5 684 83.5
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.3e-299 1032.7 667 85.8
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-299 1032.3 687 84.0
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.9e-298 1026.9 685 82.2
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-297 1025.8 684 83.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.9e-296 1021.5 655 84.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 8.4e-296 1020.0 687 82.5
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 4.2e-295 1017.7 685 81.5
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.5e-295 1017.3 689 81.1
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.1e-294 1015.4 683 84.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.8e-293 1012.3 685 82.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 687 80.2
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 6.7e-293 1010.4 682 80.4
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-292 1009.2 685 80.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 685 82.2
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 668 81.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 9.6e-292 1006.5 687 81.4
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.3e-291 1006.1 685 83.4
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.8e-291 1004.2 682 82.0
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 6.2e-291 1003.8 694 81.8
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 8.2e-291 1003.4 685 81.3
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.4e-290 1001.9 686 80.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 9.0e-290 1000.0 682 81.4
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.0e-289 998.8 682 83.4
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.6e-289 998.4 667 81.3
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 3.4e-289 998.0 687 80.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 7.6e-289 996.9 746 74.5
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-288 996.1 746 74.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.7e-288 995.7 682 81.4
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.7e-288 995.7 682 81.1
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.5e-288 993.8 686 81.9
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 8.4e-288 993.4 686 80.5
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 8.4e-288 993.4 685 80.3
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.1e-287 993.0 667 81.4
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.4e-287 992.6 667 80.5
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 9.3e-287 989.9 688 82.1
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.2e-286 989.6 663 80.4
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.1e-286 988.8 686 78.1
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 2.1e-286 988.8 680 81.3
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 4.6e-286 987.6 681 81.6
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.0e-285 986.5 653 82.1
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.7e-285 983.8 663 80.2
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.5e-284 982.6 683 80.4
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.9e-284 982.2 691 78.3
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.5e-284 981.9 664 81.2
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 4.8e-283 977.6 723 76.9
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-281 972.6 723 76.5
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 1.5e-281 972.6 667 80.2
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.7e-280 969.1 683 79.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.9e-280 968.4 691 78.7
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.8e-280 968.0 691 77.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.5e-280 967.2 731 75.8
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 8.5e-280 966.8 691 78.6
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-279 966.5 667 80.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.2e-278 963.0 686 77.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-278 963.0 684 79.7
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.6e-278 962.6 691 77.1
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 3.6e-278 961.4 660 80.2
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 6.7e-277 957.2 667 79.9
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.5e-276 955.3 692 78.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 6.9e-274 947.2 667 78.9
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 667 78.7
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-272 942.6 667 78.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 8.5e-272 940.3 689 77.1
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.7e-270 935.3 654 78.3
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.8e-269 932.6 685 77.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.8e-269 932.6 637 82.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.3e-269 932.2 690 77.1
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.3e-269 932.2 690 77.1
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 5.1e-269 931.0 667 77.8
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.3e-268 928.3 682 76.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.3e-268 928.3 689 75.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.4e-266 922.9 692 77.7
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.8e-266 922.5 684 77.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.0e-264 916.8 682 74.6
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.2e-264 915.6 664 77.1
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.8e-261 906.0 684 73.7
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 4.4e-260 901.4 1035 55.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 9.7e-260 900.2 622 81.5
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 9.7e-260 900.2 679 71.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.3e-259 899.8 608 83.7
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.8e-259 898.7 689 73.4
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.4e-258 896.3 689 73.1
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.9e-257 891.0 733 69.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.7e-256 889.4 572 85.0
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.5e-255 885.6 670 74.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.2e-254 883.2 669 74.1
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.5e-249 865.1 719 68.8
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.5e-248 860.9 718 68.8
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 8.5e-248 860.5 652 73.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.8e-243 845.5 654 72.8
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.4e-242 842.4 664 72.3
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.2e-241 840.1 670 71.5
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.0e-240 837.0 664 72.0
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.5e-236 820.8 732 65.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.3e-219 766.9 657 65.8
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.6e-217 760.0 713 65.1
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.5e-215 752.7 547 78.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 8.9e-213 744.2 659 64.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.8e-212 741.5 651 65.7
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.3e-211 740.3 650 63.4
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 8.7e-168 594.7 676 53.7
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.0e-164 583.6 424 79.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.4e-160 570.9 401 80.5
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.2e-158 563.5 368 82.1
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.4e-135 486.1 342 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.1e-133 481.5 565 54.5
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.1e-112 410.2 362 66.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 4.0e-96 356.7 501 49.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.1e-93 346.7 510 48.6
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.3e-78 298.5 716 33.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.4e-78 296.2 272 64.7
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 5.7e-58 229.9 560 35.0
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 6.5e-54 216.5 774 31.3
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.3e-49 202.2 185 64.9
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.9e-48 196.4 156 67.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-45 189.1 129 76.0
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 9.4e-45 186.0 124 79.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.5e-38 163.3 94 86.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 4.5e-31 140.6 605 27.3
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.7e-28 131.3 90 83.3
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.1e-24 119.4 668 23.2
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.8e-17 94.7 71 73.2
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 7.0e-16 90.1 688 23.4
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.8e-12 78.2 66 63.6
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.8e-11 75.5 109 50.5
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.8e-08 65.5 43 76.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 2.7e-07 61.6 54 61.1
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 5.0e-06 57.4 82 43.9


User provided reference genes

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