Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 6.1e-112 407.5 210 100.0
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.1e-76 290.4 212 74.5
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.3e-65 252.3 217 65.4
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 2.0e-62 243.0 218 63.8
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.4e-60 236.9 204 63.2
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 3.2e-60 235.7 206 64.1
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 9.3e-60 234.2 222 61.7
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.0e-58 230.7 212 59.0
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.0e-58 229.2 213 60.1
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.5e-57 226.1 167 70.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 5.6e-57 224.9 211 61.1
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 9.6e-57 224.2 203 63.1
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.3e-56 223.8 181 66.3
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 3.6e-56 222.2 205 62.0
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.4e-55 220.3 209 63.6
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.8e-55 219.9 214 65.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.8e-55 219.9 206 60.2
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.4e-55 219.5 213 56.3
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.0e-55 218.8 204 60.3
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.9e-55 218.0 213 57.7
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.2e-54 217.2 204 59.8
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.2e-54 217.2 204 59.8
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.6e-54 216.1 191 62.3
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 2.6e-54 216.1 211 58.3
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 3.4e-54 215.7 216 57.4
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.4e-54 215.3 213 56.3
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.8e-54 214.9 214 56.5
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.3e-53 213.8 213 56.8
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 6.4e-53 211.5 199 59.3
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.4e-52 210.3 183 62.8
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.9e-52 209.9 213 61.5
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 3.2e-52 209.1 212 57.1
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 5.4e-52 208.4 221 54.8
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.2e-51 207.2 192 58.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 4.6e-51 205.3 175 66.3
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 7.8e-51 204.5 213 61.0
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.0e-50 204.1 213 59.6
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.3e-50 203.8 165 69.1
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.3e-50 203.8 200 58.5
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 2.3e-50 203.0 207 54.6
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 3.0e-50 202.6 214 57.0
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 3.0e-50 202.6 181 63.0
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 5.1e-50 201.8 204 57.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 5.1e-50 201.8 200 58.0
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.5e-49 199.5 213 54.5
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-49 199.5 213 54.5
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 7.3e-49 198.0 213 56.3
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.6e-48 196.8 188 59.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 2.1e-48 196.4 206 54.9
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.8e-48 196.1 202 57.9
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 8.1e-48 194.5 162 63.0
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 4.0e-47 192.2 202 55.4
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 5.3e-47 191.8 223 57.0
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 9.0e-47 191.0 251 48.2
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 5.8e-46 188.3 168 65.5
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.3e-45 187.2 218 52.3
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.3e-45 187.2 157 65.0
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.9e-44 183.3 220 53.2
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 5.4e-44 181.8 199 49.7
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.5e-43 179.1 219 53.4
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.5e-43 179.1 218 51.4
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 4.6e-43 178.7 215 52.1
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 6.0e-43 178.3 220 54.5
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 6.0e-43 178.3 168 59.5
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 6.0e-43 178.3 168 63.7
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 6.0e-43 178.3 208 52.4
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 1.0e-42 177.6 187 54.0
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.3e-42 177.2 213 49.3
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.3e-42 177.2 199 49.7
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 3.9e-42 175.6 223 52.9
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 5.1e-42 175.3 253 45.8
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 6.7e-42 174.9 211 50.2
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 6.7e-42 174.9 163 57.7
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 6.7e-42 174.9 199 49.7
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.5e-41 173.7 197 51.3
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 5.6e-41 171.8 256 48.0
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 7.4e-41 171.4 98 79.6
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 9.6e-41 171.0 166 55.4
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.3e-40 170.6 220 52.7
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.3e-40 170.6 220 52.7
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.3e-40 170.6 220 52.7
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-40 170.2 184 56.0
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 4.8e-40 168.7 214 53.7
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 2.4e-39 166.4 220 51.8
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 9.0e-39 164.5 220 51.4
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 9.0e-39 164.5 211 54.0
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 9.0e-39 164.5 238 47.5
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-38 163.7 220 49.5
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-38 163.7 220 49.5
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 5.8e-38 161.8 181 59.7
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 5.8e-38 161.8 220 48.2
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.7e-37 160.2 190 50.5
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 6.5e-37 158.3 171 53.8
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 8.4e-37 157.9 178 47.8
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-36 156.8 183 57.9
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 3.2e-36 156.0 179 49.2
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.2e-35 154.1 182 58.2
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 8.7e-34 147.9 171 50.3
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 8.7e-34 147.9 184 49.5
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.9e-33 146.7 207 46.9
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.5e-33 146.4 106 62.3
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 3.3e-33 146.0 220 47.3
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.3e-33 146.0 184 50.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.3e-31 138.7 190 48.4
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 9.0e-31 137.9 213 46.5
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-30 135.6 99 72.7
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 4.5e-30 135.6 99 72.7
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 4.5e-30 135.6 99 72.7
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 4.5e-30 135.6 216 41.7
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.1e-27 125.2 209 40.2
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-26 124.4 127 50.4
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.3e-26 124.0 209 41.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.8e-24 116.3 101 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.7e-24 115.9 100 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.7e-24 115.9 97 57.7
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.8e-23 113.6 146 52.7
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.9e-21 106.3 197 39.6
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 5.0e-21 105.5 106 54.7
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.7e-19 99.8 58 82.8
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 5.1e-18 95.5 114 43.0
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 7.4e-17 91.7 87 50.6
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 7.4e-17 91.7 87 50.6
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 8.2e-16 88.2 69 72.5
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.1e-12 77.8 42 76.2
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.1e-11 72.0 151 33.8
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 1.4e-10 70.9 190 29.5
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 8.8e-10 68.2 62 51.6
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 9.7e-09 64.7 105 37.1
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.7e-08 63.9 96 35.4
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 2.2e-08 63.5 65 56.9
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 3.7e-08 62.8 36 72.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 4.8e-08 62.4 111 35.1
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 9.1e-07 58.2 71 53.5
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 2.0e-06 57.0 59 61.0


User provided reference genes

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