Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 2.0e-58 228.8 107 100.0
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.0e-54 216.5 107 92.5
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.5e-53 212.6 104 92.3
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 5.6e-53 210.7 104 91.3
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 7.3e-53 210.3 104 92.3
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 4.4e-50 201.1 107 88.8
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 4.4e-50 201.1 107 88.8
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 85.0
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 86.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 86.0
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 9.9e-50 199.9 107 86.9
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 9.9e-50 199.9 107 82.2
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.3e-49 199.5 107 85.0
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 84.1
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 2.2e-49 198.7 107 88.8
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 2.2e-49 198.7 107 88.8
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.9e-49 198.4 106 84.0
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 4.9e-49 197.6 103 83.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 6.4e-49 197.2 107 85.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 6.4e-49 197.2 107 85.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 84.1
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 84.1
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 83.2
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.1e-48 196.4 107 83.2
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.4e-48 196.1 107 83.2
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.4e-48 196.1 107 84.1
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.4e-48 196.1 107 84.1
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.9e-48 195.7 107 80.4
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.9e-48 195.7 100 90.0
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 83.2
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 82.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 3.2e-48 194.9 107 83.2
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 3.2e-48 194.9 107 83.2
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 4.1e-48 194.5 107 83.2
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.1e-48 194.5 108 85.2
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 4.1e-48 194.5 107 83.2
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 82.2
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 81.3
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 82.2
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.4e-48 194.1 108 84.3
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 83.2
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 7.1e-48 193.7 107 81.3
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 7.1e-48 193.7 107 82.2
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 9.2e-48 193.4 107 81.3
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 9.2e-48 193.4 107 81.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 9.2e-48 193.4 107 81.3
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 9.2e-48 193.4 107 82.2
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.2e-47 193.0 102 86.3
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.2e-47 193.0 107 81.3
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 1.2e-47 193.0 107 82.2
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 81.3
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 81.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.1e-47 192.2 105 81.9
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 81.3
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 2.7e-47 191.8 106 82.1
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 82.2
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 2.7e-47 191.8 104 82.7
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.5e-47 191.4 104 80.8
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.5e-47 191.4 107 79.4
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 3.5e-47 191.4 105 80.0
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 3.5e-47 191.4 108 83.3
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 4.6e-47 191.0 106 83.0
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 79.4
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 6.0e-47 190.7 105 80.0
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.0e-47 190.7 102 84.3
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 7.8e-47 190.3 106 83.0
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 7.8e-47 190.3 108 81.5
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 7.8e-47 190.3 107 83.2
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.0e-46 189.9 106 81.1
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.0e-46 189.9 107 79.4
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 1.0e-46 189.9 106 83.0
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.3e-46 189.5 106 82.1
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.3e-46 189.5 97 87.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.3e-46 189.5 102 84.3
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 81.3
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 81.3
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 1.7e-46 189.1 102 84.3
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.3e-46 188.7 99 84.8
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 2.3e-46 188.7 97 87.6
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 2.3e-46 188.7 97 87.6
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 81.3
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 81.3
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 81.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 78.5
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 2.3e-46 188.7 97 87.6
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 79.4
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 3.0e-46 188.3 96 87.5
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 3.9e-46 188.0 107 77.6
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.1e-46 187.6 99 84.8
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 80.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 5.1e-46 187.6 99 84.8
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 79.4
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 8.6e-46 186.8 107 80.4
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 1.1e-45 186.4 106 83.0
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.1e-45 186.4 104 82.7
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.1e-45 186.4 101 81.2
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.1e-45 186.4 104 78.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.9e-45 185.7 104 77.9
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.5e-45 185.3 97 85.6
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 3.3e-45 184.9 97 84.5
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 5.6e-45 184.1 103 79.6
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 7.3e-45 183.7 97 83.5
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.2e-44 183.0 103 81.6
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.6e-44 182.6 101 83.2
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.6e-44 182.6 97 82.5
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.6e-44 182.6 102 79.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-44 182.2 97 83.5
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.1e-44 182.2 96 88.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.1e-44 182.2 96 88.5
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 79.6
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 79.6
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 79.6
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 79.6
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.1e-44 182.2 108 79.6
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.8e-44 181.8 96 86.5
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 3.6e-44 181.4 107 76.6
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 8.1e-44 180.3 97 85.6
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 83.5
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.8e-43 179.1 99 80.8
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 2.4e-43 178.7 100 84.0
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.0e-43 177.9 98 81.6
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 6.8e-43 177.2 104 76.0
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 2.0e-42 175.6 101 83.2
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 9.9e-42 173.3 100 80.0
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 2.9e-41 171.8 98 80.6
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 2.9e-41 171.8 99 79.8
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 2.9e-41 171.8 104 74.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 1.4e-40 169.5 96 79.2
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.1e-40 167.9 89 82.0
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.7e-39 165.2 94 77.7
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 2.7e-39 165.2 99 73.7
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 3.5e-39 164.9 99 73.7
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 9.9e-34 146.7 78 85.9
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 1.1e-32 143.3 85 78.8
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 5.1e-30 134.4 68 85.3
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.4e-27 126.3 93 62.4
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 2.4e-27 125.6 93 62.4
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 5.3e-27 124.4 74 77.0
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 5.3e-27 124.4 88 64.8
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 1.2e-26 123.2 74 71.6
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.6e-26 122.1 72 76.4
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 7.6e-26 120.6 69 81.2
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 1.3e-25 119.8 84 64.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 2.1e-23 112.5 69 73.9
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 3.5e-23 111.7 102 55.9
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-22 109.8 90 57.8
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 1.8e-22 109.4 83 55.4
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 2.8e-20 102.1 60 71.7
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-16 90.1 70 62.9
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 7.1e-16 87.4 71 52.1
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 1.1e-13 80.1 54 68.5
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.6e-12 76.3 49 69.4
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.3e-09 66.6 49 61.2
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.3e-09 66.6 84 39.3
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.9e-08 62.8 37 75.7
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 4.2e-08 61.6 37 75.7


User provided reference genes

Program Settings