Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 6.6e-180 634.0 346 100.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.8e-138 495.0 291 80.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 6.9e-137 491.1 332 75.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-136 490.3 291 79.4
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.5e-134 482.6 346 70.2
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 3.6e-133 478.8 293 78.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.0e-132 475.7 348 69.3
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 5.1e-132 474.9 293 78.2
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.5e-131 473.4 293 77.8
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 5.7e-131 471.5 293 77.5
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 7.4e-131 471.1 347 68.0
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.7e-130 469.9 292 79.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.7e-130 469.9 292 76.4
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.1e-129 467.2 293 76.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.8e-129 466.5 336 73.5
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.1e-129 465.3 293 76.1
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.1e-129 464.2 336 70.2
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.2e-128 463.8 291 75.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.0e-128 463.0 295 75.3
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 7.7e-128 461.1 333 66.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 7.7e-128 461.1 333 66.4
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 7.7e-128 461.1 341 66.6
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-127 460.7 292 77.4
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.2e-127 459.5 297 73.4
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-127 459.5 293 75.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.8e-127 458.8 293 74.4
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 5.0e-127 458.4 292 75.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.5e-126 456.1 350 69.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.2e-126 455.3 344 67.7
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 7.2e-126 454.5 293 73.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.4e-126 454.1 293 75.4
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.6e-125 453.4 358 68.7
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 3.6e-125 452.2 332 66.6
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.5e-123 446.8 296 72.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.6e-123 446.0 298 72.1
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 2.6e-123 446.0 290 73.8
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 3.3e-123 445.7 297 70.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 4.4e-123 445.3 292 70.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 5.7e-123 444.9 293 72.4
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.3e-122 443.7 291 71.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.7e-122 443.4 291 73.2
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.7e-122 443.4 296 70.3
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.8e-122 442.6 337 64.1
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.8e-122 442.6 292 76.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 3.7e-122 442.2 295 71.9
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 6.3e-122 441.4 294 70.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 9.1e-121 437.6 293 73.0
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 9.1e-121 437.6 292 69.5
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.2e-120 437.2 294 70.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.5e-120 436.8 293 73.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.5e-120 436.8 336 67.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.5e-120 436.8 336 67.6
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.6e-120 436.0 293 68.3
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 3.4e-120 435.6 291 71.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.4e-120 435.6 288 73.3
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.4e-120 435.6 347 62.2
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.5e-120 435.3 293 70.6
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.0e-119 434.1 293 72.4
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.0e-119 434.1 291 70.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.0e-119 434.1 291 70.1
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.2e-119 433.0 349 62.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.9e-119 432.6 293 72.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 2.9e-119 432.6 291 70.1
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.8e-119 432.2 338 63.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.8e-119 432.2 292 72.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-118 430.3 293 70.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-118 429.9 293 69.6
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.9e-118 429.9 293 69.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.9e-118 429.9 348 60.6
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.5e-118 429.5 294 70.1
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.2e-118 429.1 300 67.0
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.5e-118 428.3 293 70.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.2e-118 427.9 293 69.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.2e-117 427.2 299 70.6
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.6e-117 426.8 294 70.1
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-117 426.4 293 70.0
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 2.1e-117 426.4 293 70.0
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.7e-117 426.0 334 63.8
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.7e-117 425.2 348 61.5
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.0e-116 424.1 293 68.3
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.0e-116 424.1 348 61.8
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.0e-116 424.1 289 71.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-116 423.7 294 69.4
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-116 423.3 294 70.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.9e-116 422.2 296 69.9
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 8.8e-116 421.0 306 67.6
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.1e-115 420.6 295 70.2
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-115 420.6 294 68.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.6e-115 419.5 295 69.8
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.8e-114 416.0 344 60.5
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 5.3e-113 411.8 286 69.2
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 9.1e-113 411.0 296 66.9
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.0e-112 409.8 292 67.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-111 407.1 332 67.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.7e-111 406.8 332 67.2
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 6.5e-111 404.8 298 64.8
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-110 404.1 293 66.2
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-110 403.7 294 67.7
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-110 403.7 332 66.9
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 5.5e-110 401.7 258 72.1
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.4e-108 397.1 293 66.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.3e-108 396.4 332 58.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.6e-107 392.9 328 61.0
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.3e-106 388.3 292 66.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.4e-105 386.3 292 62.3
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.5e-104 382.5 293 66.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.9e-104 381.7 290 60.7
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.3e-103 380.6 298 63.8
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 3.6e-101 372.5 268 66.0
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.7e-98 363.6 295 59.0
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 5.4e-97 358.6 343 56.3
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 7.7e-96 354.8 290 60.3
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.0e-95 354.4 293 63.1
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.0e-92 342.4 286 57.3
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 5.4e-89 332.0 272 62.5
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-87 327.4 304 59.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.9e-87 326.2 305 52.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.9e-82 308.9 248 60.9
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.4e-81 306.6 260 63.1
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.5e-78 296.6 270 54.8
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.3e-78 295.0 196 73.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.3e-76 290.0 342 43.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.1e-72 276.9 290 45.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.1e-71 272.3 197 69.5
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.1e-68 263.1 286 44.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 3.4e-67 259.6 261 52.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 8.3e-66 255.0 286 43.0
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 9.2e-65 251.5 296 43.2
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.6e-63 245.4 159 71.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.6e-59 233.4 260 45.0
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 3.2e-57 226.5 170 63.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 7.1e-49 198.7 222 46.8
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.9e-39 166.4 84 90.5
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 4.3e-38 162.9 280 34.6
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.0e-35 154.1 119 60.5
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 6.7e-31 139.0 114 60.5
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.1e-28 130.2 68 86.8
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.3e-28 129.4 99 62.6
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 9.0e-28 128.6 73 80.8
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.4e-27 126.7 91 65.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 5.5e-25 119.4 76 72.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.0e-24 115.9 92 58.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.0e-24 115.9 92 58.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.3e-22 110.2 87 64.4
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 3.3e-22 110.2 88 55.7
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.8e-20 104.4 80 58.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 6.9e-20 102.4 173 36.4
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 5.9e-19 99.4 77 61.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 2.7e-16 90.5 58 75.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-14 85.1 58 67.2
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 4.5e-11 73.2 46 69.6
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.0e-10 72.0 90 45.6
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.8e-10 70.1 57 56.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.5e-10 68.9 63 54.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.1e-08 64.3 92 34.8
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 3.6e-08 63.5 51 54.9


User provided reference genes

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