Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 0.0e+00 1244.6 627 100.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.3e-303 1045.8 619 85.9
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.9e-303 1044.6 619 85.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 6.6e-303 1043.5 624 84.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 5.5e-302 1040.4 602 87.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 4.7e-301 1037.3 603 87.1
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.8e-300 1035.4 619 84.8
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 9.8e-299 1029.6 610 85.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.2e-298 1028.5 604 85.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 8.3e-298 1026.5 624 82.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.8e-297 1025.4 620 84.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.0e-297 1023.5 603 86.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 9.2e-297 1023.1 625 83.4
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 5.9e-296 1020.4 628 81.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.0e-295 1019.6 619 83.8
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.3e-295 1018.5 624 83.5
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.3e-294 1014.6 613 83.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.2e-293 1012.7 624 83.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.7e-293 1010.7 630 82.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 8.0e-293 1010.0 603 84.1
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.0e-292 1007.7 607 83.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 4.4e-291 1004.2 623 82.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-290 1002.7 622 82.2
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.9e-290 1000.7 607 82.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 3.2e-289 998.0 602 84.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.7e-288 995.0 619 81.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.8e-288 993.4 623 81.9
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.3e-287 991.9 638 81.0
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.0e-287 990.7 623 81.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.0e-287 990.7 623 81.5
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 5.0e-287 990.7 623 81.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 5.0e-287 990.7 621 81.6
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.6e-287 989.9 608 82.2
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.3e-286 988.0 618 81.1
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.6e-286 987.3 608 82.1
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-285 985.3 620 81.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.2e-285 983.8 595 83.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 8.0e-285 983.4 625 80.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.1e-284 981.5 611 81.8
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 4.0e-284 981.1 622 80.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 6.8e-284 980.3 621 81.6
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.2e-283 979.5 625 80.5
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 7.5e-283 976.9 604 82.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.9e-282 974.9 619 79.8
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.2e-281 971.5 635 78.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.1e-281 971.1 625 79.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.0e-280 967.2 603 81.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.0e-279 966.5 576 83.7
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.3e-279 965.3 619 79.8
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.9e-279 964.5 634 77.8
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.1e-278 963.0 605 80.7
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-277 959.1 603 80.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.8e-277 958.4 619 79.3
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.2e-276 954.1 619 79.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.0e-275 952.2 631 78.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.6e-275 951.8 628 78.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.4e-275 951.0 603 79.9
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.5e-275 950.3 624 77.7
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 7.5e-275 950.3 603 80.1
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 7.5e-275 950.3 619 79.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 6.4e-274 947.2 603 79.8
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 6.4e-274 947.2 606 78.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-272 942.6 632 77.2
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.3e-271 938.7 619 78.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.9e-271 937.9 594 80.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.5e-270 935.3 575 82.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.3e-270 934.5 602 79.7
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.6e-269 932.6 626 77.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.1e-269 932.2 604 79.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 8.1e-269 930.2 626 77.5
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.1e-268 928.3 608 77.3
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.0e-267 925.6 601 78.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.4e-267 924.9 604 78.1
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.2e-266 922.2 624 76.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.4e-265 918.7 618 76.2
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 5.1e-263 911.0 593 77.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.6e-263 910.6 558 82.1
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.6e-259 897.1 615 75.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.7e-258 896.0 526 85.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 3.8e-258 894.8 602 76.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.1e-257 893.3 524 84.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-257 892.5 619 73.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.2e-257 891.7 597 75.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 5.4e-257 891.0 589 77.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.6e-256 889.4 671 70.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 4.8e-253 877.9 619 74.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.8e-253 877.9 618 74.4
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.4e-252 875.5 615 73.3
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 6.9e-252 874.0 619 73.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.2e-251 873.2 623 73.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.4e-251 871.7 625 73.9
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 7.6e-251 870.5 630 73.2
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 9.9e-251 870.2 600 75.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.8e-250 868.2 623 73.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.4e-249 866.3 586 75.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.2e-248 863.2 624 72.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.6e-248 862.8 625 73.4
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-247 859.4 616 72.9
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.5e-246 855.5 624 72.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-245 853.2 611 71.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 4.0e-244 848.2 620 70.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 6.9e-244 847.4 559 77.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.9e-244 847.4 595 73.8
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 9.0e-244 847.0 597 73.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.0e-244 847.0 597 73.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.6e-243 845.5 597 73.0
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.5e-243 844.7 556 77.3
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 7.6e-243 844.0 620 70.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.0e-242 843.6 597 72.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.4e-241 839.7 618 69.7
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.2e-241 838.2 597 72.9
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.2e-241 838.2 597 72.9
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.5e-240 835.1 571 75.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 2.3e-239 832.4 620 70.2
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.9e-238 829.3 567 76.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.7e-237 825.1 616 70.0
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.7e-237 825.1 616 70.0
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.2e-233 812.0 549 77.0
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.6e-232 809.7 607 71.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.5e-230 803.1 608 70.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-228 794.7 599 68.8
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 9.0e-228 793.9 540 75.7
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.8e-226 788.5 597 67.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-225 786.2 574 71.3
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.4e-223 780.0 600 68.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.8e-221 772.3 532 72.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.1e-220 768.8 610 66.6
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.9e-217 759.6 607 68.4
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.2e-217 757.7 526 71.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.7e-216 755.7 524 73.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 4.4e-214 748.4 567 67.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 5.7e-214 748.0 419 88.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.1e-212 740.7 410 89.0
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.0e-211 739.6 612 65.5
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 4.5e-211 738.4 417 89.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.2e-209 732.3 417 86.8
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.2e-207 724.9 556 67.4
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.1e-204 717.2 583 65.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.1e-204 714.1 527 68.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-203 712.6 527 69.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-195 687.2 527 67.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.7e-195 686.0 495 70.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.7e-194 683.3 519 68.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.2e-190 670.6 528 64.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.7e-190 668.3 462 77.1
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.4e-172 610.5 573 55.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 4.1e-164 582.4 532 60.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.1e-164 581.6 381 76.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.4e-159 567.4 479 60.1
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.1e-155 553.5 338 82.0
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.3e-145 519.6 339 78.5
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.0e-139 498.8 465 58.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-112 411.4 341 64.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-78 298.5 157 93.6
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-68 263.8 145 91.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 6.2e-51 206.5 164 62.2
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 4.0e-50 203.8 164 60.4
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 4.9e-48 196.8 161 60.2
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.2e-47 194.1 161 59.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 5.2e-42 176.8 123 72.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 7.1e-39 166.4 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.8e-27 127.9 91 69.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.3e-24 119.0 115 58.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.8e-24 117.5 91 63.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.0e-22 110.2 491 24.4
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-21 107.8 312 28.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.6e-20 103.6 60 86.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.2e-17 95.9 126 41.3
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 2.9e-16 91.3 86 54.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.8e-16 90.9 100 55.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.4e-16 90.1 191 31.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-14 84.7 191 34.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.0e-14 83.6 70 71.4
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.1e-10 71.2 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.0e-09 68.6 56 55.4
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.2e-07 60.8 58 55.2


User provided reference genes

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