Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 1.2e-80 303.1 152 100.0
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 1.0e-60 236.9 155 78.7
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 4.3e-59 231.5 152 78.9
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 9.7e-59 230.3 156 78.2
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 3.7e-58 228.4 156 77.6
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 3.7e-58 228.4 156 77.6
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 3.7e-58 228.4 151 77.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 6.3e-58 227.6 156 77.6
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 8.2e-58 227.3 151 77.5
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.8e-57 226.1 151 77.5
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 2.4e-57 225.7 160 74.4
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 2.6e-56 222.2 156 76.3
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 4.5e-56 221.5 151 78.1
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 4.5e-56 221.5 166 73.5
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.8e-55 218.4 158 74.1
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.0e-55 218.0 155 74.2
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.1e-54 216.9 160 73.8
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.4e-54 216.5 153 75.2
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 2.5e-54 215.7 158 73.4
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.2e-54 214.2 154 74.0
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.2e-54 214.2 154 74.0
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 9.4e-54 213.8 160 73.1
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 9.4e-54 213.8 161 73.9
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.2e-53 213.4 154 75.3
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 1.2e-53 213.4 151 75.5
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 2.1e-53 212.6 160 70.6
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.7e-53 212.2 160 72.5
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.7e-53 212.2 163 69.3
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 4.6e-53 211.5 152 73.7
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 6.1e-53 211.1 164 72.6
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 6.1e-53 211.1 156 71.8
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.1e-53 211.1 154 70.1
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 7.9e-53 210.7 158 72.2
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.4e-52 209.9 151 72.8
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.4e-52 209.9 154 72.1
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 3.0e-52 208.8 151 74.2
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 3.9e-52 208.4 156 73.1
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 3.9e-52 208.4 138 78.3
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 3.9e-52 208.4 155 71.6
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 6.7e-52 207.6 160 70.6
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 6.7e-52 207.6 156 71.2
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 8.8e-52 207.2 155 71.0
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.1e-51 206.8 157 72.0
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.5e-51 206.5 160 70.0
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 2.6e-51 205.7 153 70.6
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 2.6e-51 205.7 151 72.8
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.6e-51 205.7 138 79.7
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 3.3e-51 205.3 158 70.9
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 3.3e-51 205.3 161 71.4
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 5.7e-51 204.5 154 70.8
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.3e-50 203.4 162 69.8
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 1.7e-50 203.0 132 78.8
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.7e-50 203.0 152 71.1
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.8e-50 202.2 155 71.0
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.8e-50 202.2 154 70.8
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.8e-50 202.2 155 71.0
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.8e-50 202.2 154 70.8
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 2.8e-50 202.2 151 72.2
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 2.8e-50 202.2 140 77.9
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 3.7e-50 201.8 137 75.9
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 4.8e-50 201.4 155 71.0
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 6.3e-50 201.1 161 69.6
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 6.3e-50 201.1 156 69.9
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 6.3e-50 201.1 133 78.9
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 8.2e-50 200.7 154 71.4
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 8.2e-50 200.7 154 71.4
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 1.1e-49 200.3 155 69.0
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 1.1e-49 200.3 156 69.9
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.1e-49 200.3 157 71.3
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.1e-49 200.3 131 77.9
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 1.8e-49 199.5 151 70.9
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 1.8e-49 199.5 150 69.3
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.8e-49 199.5 155 70.3
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 1.8e-49 199.5 155 70.3
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.8e-49 199.5 155 70.3
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 2.4e-49 199.1 156 69.2
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 5.3e-49 198.0 151 72.2
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 5.3e-49 198.0 151 72.2
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 5.3e-49 198.0 151 72.2
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 5.3e-49 198.0 159 69.8
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 5.3e-49 198.0 120 80.8
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 5.3e-49 198.0 154 68.8
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 6.9e-49 197.6 154 68.8
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 9.1e-49 197.2 155 70.3
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 9.1e-49 197.2 155 70.3
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 9.1e-49 197.2 154 68.8
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 1.2e-48 196.8 131 77.1
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 1.2e-48 196.8 149 70.5
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 2.0e-48 196.1 155 69.0
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 2.0e-48 196.1 159 67.9
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.6e-48 195.7 164 67.1
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 3.4e-48 195.3 156 69.2
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 3.4e-48 195.3 156 69.2
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 4.5e-48 194.9 155 69.7
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 4.5e-48 194.9 158 68.4
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 5.9e-48 194.5 158 66.5
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.3e-47 193.4 155 68.4
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 2.9e-47 192.2 131 75.6
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 2.9e-47 192.2 141 71.6
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.9e-46 189.5 160 64.4
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 3.2e-46 188.7 154 66.2
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 3.2e-46 188.7 155 63.9
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 3.2e-46 188.7 111 82.9
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 9.4e-46 187.2 153 66.7
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.2e-45 186.8 111 83.8
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.0e-44 183.7 102 89.2
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 1.0e-44 183.7 111 84.7
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 2.3e-44 182.6 101 89.1
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 8.8e-44 180.6 109 81.7
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 2.6e-43 179.1 128 70.3
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.4e-43 177.6 148 66.2
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 4.8e-42 174.9 102 83.3
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.4e-41 173.3 126 69.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.0e-39 167.2 149 63.8
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 3.6e-37 158.7 113 66.4
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 8.8e-36 154.1 156 51.9
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 2.0e-35 152.9 163 58.9
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.4e-33 146.7 134 56.7
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 7.0e-33 144.4 93 73.1
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.0e-31 140.6 129 54.3
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 1.3e-31 140.2 153 54.9
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 2.1e-29 132.9 93 64.5
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 2.6e-27 125.9 72 81.9
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 6.1e-21 104.8 91 56.0
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 2.4e-17 92.8 124 45.2
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 3.1e-17 92.4 129 44.2
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 4.5e-16 88.6 53 84.9
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.3e-15 87.0 51 86.3
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.3e-15 87.0 51 86.3
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 9.8e-11 70.9 95 41.1


User provided reference genes

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