Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 3587.0 1815 100.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 3031.5 1819 83.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2999.9 1818 82.4
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2993.8 1816 82.8
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2951.8 1974 76.7
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2947.1 1822 81.3
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2927.9 1824 80.5
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2926.0 1821 81.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2921.0 1805 80.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2920.6 1819 80.3
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2920.6 1819 79.9
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2913.6 1765 82.3
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2910.9 1819 80.2
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2908.2 1820 79.6
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2904.0 1820 79.2
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2903.6 1817 80.0
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2902.8 1820 79.1
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2902.1 1820 79.1
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2901.3 1820 79.1
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2896.7 1821 79.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2883.2 1817 79.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2875.1 1819 79.6
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2857.0 1834 78.0
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2855.9 1805 79.7
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2847.8 1772 80.5
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2846.2 1818 78.3
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2833.5 1819 78.8
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2824.7 1836 77.6
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2816.2 1927 74.4
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2802.7 1816 76.3
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2790.4 1757 78.7
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2788.1 1857 76.9
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2786.5 1821 76.4
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2782.3 1820 76.2
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2781.9 1820 75.7
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2781.1 1821 76.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2772.3 1820 75.9
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2758.4 1818 75.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2758.4 1821 75.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2748.8 1821 75.2
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2747.6 1820 75.3
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2740.7 1818 74.9
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2733.0 1818 75.6
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2726.4 1675 81.9
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2724.9 1831 75.4
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2719.5 1817 74.6
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2717.6 1819 75.0
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2713.3 1819 74.2
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2710.6 1820 75.2
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2709.9 1817 74.2
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2709.5 1817 74.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2708.3 1816 74.3
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2703.3 1818 74.0
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2698.3 1819 74.1
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2697.9 1902 71.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2697.5 1819 74.1
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2691.4 1818 73.7
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2691.4 1819 74.1
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2688.3 1819 73.8
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2687.9 1818 73.6
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2686.0 1818 73.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2685.6 1818 73.7
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2685.6 1818 73.8
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2682.1 1824 74.2
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2679.8 1819 73.6
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2674.0 1818 73.7
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2667.5 1818 74.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2667.1 1819 73.4
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2661.3 1818 73.0
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2653.2 1769 75.4
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2646.3 1818 73.1
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2636.3 1816 72.6
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2624.0 1844 71.1
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2615.1 1802 72.5
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2601.6 1820 71.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2598.2 1817 72.3
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2593.5 1821 71.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2593.1 1814 72.7
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2588.1 1832 70.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2587.8 1895 69.8
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2582.4 1813 71.0
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2563.1 1948 68.0
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2550.8 1792 72.0
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2547.7 1856 70.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2545.8 1826 70.2
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2526.1 1834 70.2
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2506.9 1818 70.5
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2506.1 1906 68.2
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2501.5 1817 69.6
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2489.5 1625 77.8
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2461.0 1564 80.1
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2422.9 1841 66.7
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2397.1 1832 65.8
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2375.1 1649 72.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2353.9 1821 65.2
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2307.7 1681 69.8
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2291.2 1741 69.9
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2290.0 1518 75.4
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2200.6 1446 75.3
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2191.4 1816 61.1
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1946.0 1147 83.8
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1917.5 1252 77.2
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1858.2 1446 65.8
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1745.7 1817 52.5
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1461.4 945 75.1
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1428.7 1856 42.6
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1401.0 1936 41.6
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1387.9 1860 42.7
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1338.2 1880 40.1
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1234.9 1842 39.0
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1217.2 863 72.4
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1204.1 1872 38.2
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1161.0 1846 37.2
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1098.6 947 62.0
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.2e-311 1074.3 722 73.7
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 2.0e-304 1050.0 1847 35.3
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.1e-281 974.5 1168 50.8
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 5.9e-280 968.8 1973 32.8
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.0e-264 917.1 689 64.7
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 6.2e-237 825.9 505 82.8
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.2e-185 653.7 625 60.6
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.1e-147 528.5 635 50.1
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 8.3e-141 506.5 458 53.7
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.4e-133 480.3 339 71.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 2.3e-130 471.9 1907 25.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.1e-119 434.9 322 68.6
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.5e-113 416.0 467 48.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 6.0e-107 394.0 246 83.7
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.3e-106 392.9 221 81.0
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.3e-106 392.1 302 65.2
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.3e-104 386.3 301 66.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 5.9e-86 324.3 1924 22.3
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.9e-82 311.6 359 52.4
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-78 300.1 226 64.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 4.2e-76 291.6 345 50.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 2.3e-74 285.8 167 80.2
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.9e-40 172.6 138 65.2
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 4.9e-40 171.8 100 86.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.6e-36 158.3 210 48.1
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.1e-31 144.1 653 24.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.9e-31 143.3 1997 19.6
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 4.1e-23 115.5 74 71.6
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.4e-23 115.2 72 77.8
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 9.2e-23 114.4 65 87.7
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.7e-22 112.8 93 69.9
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 6.0e-22 111.7 121 58.7
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 1.0e-21 110.9 163 49.1
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 1.7e-21 110.2 74 68.9
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 9.6e-20 104.4 94 64.9
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.4e-15 90.5 74 66.2
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.6e-14 87.0 96 44.8
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.6e-13 81.6 73 47.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 1.3e-11 77.4 63 55.6
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.1e-11 74.7 71 57.7
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-10 73.2 170 39.4
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 6.9e-10 71.6 45 75.6


User provided reference genes

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