Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G004910 Manihot esculenta HOM05D001363 ORTHO05D006255 6.7e-78 293.9 142 100.0
Manes.01G004820 Manihot esculenta HOM05D001363 ORTHO05D006255 5.1e-46 188.0 142 69.7
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 2.2e-25 119.4 141 48.9
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 5.5e-24 114.8 140 45.7
Atru.chr7.643 Acer truncatum HOM05D001363 ORTHO05D006255 2.1e-23 112.8 140 45.7
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 1.4e-22 110.2 138 46.4
Cpa.g.sc95.51 Carica papaya HOM05D001363 ORTHO05D006255 1.8e-22 109.8 145 46.2
Sabra18G0080300 Salix brachista HOM05D001363 ORTHO05D006255 8.8e-22 107.5 143 49.0
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 1.5e-21 106.7 138 45.7
Potri.018G093100 Populus trichocarpa HOM05D001363 ORTHO05D006255 4.4e-21 105.1 146 47.3
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 2.2e-20 102.8 148 45.9
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 3.7e-20 102.1 140 42.9
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 1.4e-19 100.1 140 44.3
SHI41748 Sapria himalayana HOM05D001363 ORTHO05D006255 1.2e-18 97.1 129 45.7
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 1.6e-18 96.7 140 42.1
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 2.0e-18 96.3 141 43.3
VMungo1383G3248 Vigna mungo HOM05D001363 ORTHO05D006255 3.5e-18 95.5 141 39.7
CsaV3_2G008370 Cucumis sativus L. HOM05D001363 ORTHO05D006255 5.9e-18 94.7 141 44.0
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 5.9e-18 94.7 141 42.6
arahy.Tifrunner.gnm1.ann1.YA5C6P Arachis hypogaea HOM05D001363 ORTHO05D006255 1.3e-17 93.6 144 38.9
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 1.3e-17 93.6 141 41.8
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 1.3e-17 93.6 141 41.8
MELO3C004027.2 Cucumis melo HOM05D001363 ORTHO05D006255 1.7e-17 93.2 141 44.0
ClCG11G012170 Citrullus lanatus HOM05D001363 ORTHO05D006255 2.3e-17 92.8 141 43.3
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 2.3e-17 92.8 140 40.0
THA.LOC104813524 Tarenaya hassleriana HOM05D001363 ORTHO05D006255 5.0e-17 91.7 137 40.9
arahy.Tifrunner.gnm1.ann1.2PT66T Arachis hypogaea HOM05D001363 ORTHO05D006255 6.5e-17 91.3 144 38.2
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 1.1e-16 90.5 141 37.6
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 1.1e-16 90.5 140 41.4
BcaC01g06492 Brassica carinata HOM05D001363 ORTHO05D006255 4.2e-16 88.6 140 38.6
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 5.5e-16 88.2 140 38.6
Nn2g12720 Nelumbo nucifera HOM05D001363 ORTHO05D006255 7.2e-16 87.8 140 38.6
PSO339G0974 Papaver somniferum HOM05D000001 ORTHO05D006255 7.2e-16 87.8 141 41.1
Lj6g0018832 Lotus japonicus HOM05D001363 ORTHO05D006255 9.5e-16 87.4 142 38.0
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 1.2e-15 87.0 140 38.6
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 1.2e-15 87.0 140 37.1
AT5G57450 Arabidopsis thaliana HOM05D001363 ORTHO05D006255 1.6e-15 86.7 138 39.1
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 1.6e-15 86.7 141 39.0
Ca_12655_v3 Cicer arietinum L. HOM05D001363 ORTHO05D006255 2.1e-15 86.3 128 39.1
PSO801G0379 Papaver somniferum HOM05D001363 ORTHO05D006255 2.1e-15 86.3 141 40.4
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 2.1e-15 86.3 143 39.9
Glyma.18G288200 Glycine max HOM05D001363 ORTHO05D006255 2.8e-15 85.9 141 36.2
Sed0007175 Sechium edule HOM05D001363 ORTHO05D006255 2.8e-15 85.9 140 37.1
Phvul.008G013800 Phaseolus vulgaris HOM05D001363 ORTHO05D006255 4.7e-15 85.1 141 34.8
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 4.7e-15 85.1 153 39.2
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 8.0e-15 84.3 140 36.4
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 8.0e-15 84.3 138 34.8
MSTRG.19704 Avicennia marina HOM05D001363 ORTHO05D006255 2.3e-14 82.8 143 39.9
Cc06_g13270 Coffea canephora HOM05D001363 ORTHO05D006255 2.3e-14 82.8 143 39.2
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 2.3e-14 82.8 140 37.9
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 3.0e-14 82.4 140 35.0
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 3.0e-14 82.4 140 36.4
VMungo1309G0399 Vigna mungo HOM05D001363 ORTHO05D006255 4.0e-14 82.0 130 37.7
CANSAT11G0841 Cannabis sativa HOM05D001363 ORTHO05D006255 5.2e-14 81.6 140 40.7
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 6.8e-14 81.3 140 35.0
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 6.8e-14 81.3 140 39.3
Actinidia38636 Actinidia chinensis HOM05D001363 ORTHO05D006255 1.2e-13 80.5 149 35.6
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 1.2e-13 80.5 141 34.8
Prupe.1G061700 Prunus persica HOM05D001363 ORTHO05D006255 1.5e-13 80.1 140 34.3
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 2.6e-13 79.3 141 34.8
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 3.4e-13 79.0 140 37.9
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 3.4e-13 79.0 139 35.3
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 4.4e-13 78.6 144 37.5
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 4.4e-13 78.6 143 35.0
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 4.4e-13 78.6 142 36.6
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 5.7e-13 78.2 144 36.8
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 7.5e-13 77.8 140 37.9
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 7.5e-13 77.8 139 34.5
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 9.8e-13 77.4 141 34.8
VMungo1080G0746 Vigna mungo HOM05D001363 ORTHO05D006255 9.8e-13 77.4 138 34.8
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 2.2e-12 76.3 139 34.5
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 2.8e-12 75.9 144 36.8
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 3.7e-12 75.5 49 69.4
AUR62034263 Chenopodium quinoa HOM05D001363 ORTHO05D006255 4.9e-12 75.1 142 38.0
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 4.9e-12 75.1 143 35.7
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 6.3e-12 74.7 140 37.1
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 1.1e-11 73.9 140 39.3
PGSC0003DMG400020439 Solanum tuberosum HOM05D001363 ORTHO05D006255 1.1e-11 73.9 142 35.9
ECA236G4924 Erigeron canadensis HOM05D001363 ORTHO05D006255 3.1e-11 72.4 140 35.7
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 5.4e-11 71.6 128 33.6
SGA_v2.0_scaffold66G22453 Striga asiatica HOM05D001363 ORTHO05D006255 9.2e-11 70.9 142 33.1
MBI14_g17365_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D006255 1.2e-10 70.5 138 34.1
SalBow6G0285 Salvia bowleyana HOM05D001363 ORTHO05D006255 2.0e-10 69.7 143 33.6
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 2.7e-10 69.3 146 34.9
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 1.0e-09 67.4 142 34.5
unitig_0.g574 Utricularia gibba HOM05D001363 ORTHO05D006255 1.3e-09 67.0 128 34.4
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 2.3e-09 66.2 135 37.0
ATR0580G043 Amborella trichopoda HOM05D001363 ORTHO05D006255 2.9e-09 65.9 127 35.4
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 2.9e-09 65.9 139 36.7
Lalb_Chr11g0072311 Lupinus albus HOM05D001363 ORTHO05D006255 3.3e-08 62.4 49 59.2
HanXRQChr05g0143031 Helianthus annuus HOM05D001363 ORTHO05D006255 5.6e-08 61.6 124 36.3
Medtr2g445230 Medicago truncatula HOM05D001363 ORTHO05D006255 7.3e-08 61.2 139 33.1
CAN.G1081.7 Capsicum annuum HOM05D001363 ORTHO05D006255 2.1e-07 59.7 124 34.7
RcHm_v2.0_Chr4g0402521 Rosa chinensis HOM05D001363 ORTHO05D006255 3.6e-07 58.9 85 43.5
TPR.G9532 Trifolium pratense HOM05D001363 ORTHO05D006255 8.0e-07 57.8 127 32.3
CBR_g28512 Chara braunii HOM05D001363 ORTHO05D006255 6.8e-06 54.7 104 35.6


User provided reference genes

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