Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 0.0e+00 1729.1 919 100.0
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 2.3e-264 916.0 981 58.6
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 3.5e-236 822.4 856 60.6
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.5e-199 700.7 998 48.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 2.9e-198 696.4 994 48.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.5e-186 656.8 999 47.6
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.9e-181 640.6 1007 47.3
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.7e-180 636.7 980 47.6
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.8e-179 634.0 947 49.5
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.1e-178 631.3 998 46.2
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 9.0e-176 621.7 1037 45.7
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.2e-174 617.1 1017 45.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 8.4e-174 615.1 1017 45.4
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.2e-172 611.3 1002 47.2
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 2.2e-166 590.5 992 46.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 6.5e-166 589.0 935 46.5
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.9e-165 587.4 989 45.1
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.1e-164 583.9 992 46.2
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 7.9e-164 582.0 996 46.1
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 2.0e-159 567.4 948 46.7
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 4.2e-157 559.7 941 46.0
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 6.7e-155 552.4 924 45.3
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 7.4e-154 548.9 912 43.0
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.3e-153 545.8 982 42.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.1e-152 545.0 1046 41.6
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.6e-151 540.4 979 41.7
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.9e-151 539.3 979 41.9
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.3e-150 538.1 796 48.6
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.5e-149 532.7 973 42.2
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 3.9e-147 526.6 988 38.9
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.1e-146 525.0 961 43.3
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 7.0e-144 515.8 865 46.4
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.0e-142 511.9 827 45.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 2.7e-140 503.8 1001 41.1
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 4.0e-139 500.0 1007 39.6
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 6.7e-139 499.2 994 42.2
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.2e-138 498.4 995 41.8
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.3e-137 495.0 993 39.7
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 6.3e-137 492.7 979 40.8
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 8.2e-137 492.3 754 48.5
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 3.1e-136 490.3 1003 40.1
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 2.7e-135 487.3 980 42.1
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.5e-135 486.9 991 41.7
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 7.7e-135 485.7 982 40.5
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 1.1e-133 481.9 1115 38.0
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.9e-133 481.1 972 39.3
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 5.5e-133 479.6 1011 40.0
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.0e-131 473.8 977 40.3
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 3.4e-130 470.3 1008 40.0
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 1.6e-127 461.5 1000 40.1
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 4.5e-127 459.9 992 39.3
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 7.7e-127 459.1 987 39.6
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.7e-126 458.0 1018 39.7
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.9e-126 457.2 988 39.5
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 8.6e-126 455.7 887 41.1
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 3.3e-125 453.8 990 39.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 7.2e-125 452.6 991 39.2
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.0e-123 447.2 973 39.6
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 5.2e-123 446.4 1017 38.3
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.5e-122 444.9 974 37.1
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 2.8e-121 440.7 848 41.9
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 8.3e-121 439.1 908 39.8
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 8.3e-121 439.1 996 39.3
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 4.5e-119 433.3 968 39.5
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 1.0e-118 432.2 873 40.3
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 2.9e-118 430.6 982 39.5
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 5.2e-115 419.9 989 38.7
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.2e-114 418.7 964 37.8
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.7e-113 413.7 814 40.4
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.4e-112 411.8 988 37.6
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.6e-111 408.3 880 39.1
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.0e-111 407.9 963 39.0
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 4.6e-111 406.8 967 37.7
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.7e-110 404.8 1000 37.4
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.3e-110 404.4 931 37.8
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 8.6e-110 402.5 1000 36.8
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.9e-109 401.4 1013 36.6
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 8.0e-108 396.0 937 37.6
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.4e-104 385.2 964 37.1
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 2.4e-104 384.4 971 37.7
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.4e-104 384.4 969 37.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 9.2e-104 382.5 971 36.9
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.6e-103 380.2 1070 36.6
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.3e-102 378.6 971 37.1
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.3e-102 378.6 1018 36.9
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.7e-102 378.3 996 36.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 4.3e-101 373.6 866 36.8
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 7.3e-101 372.9 820 36.6
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.1e-100 371.3 1019 36.5
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.1e-99 369.0 913 37.7
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 5.2e-99 366.7 1061 36.0
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 6.8e-99 366.3 920 36.7
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 5.8e-98 363.2 966 35.4
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 6.4e-97 359.8 1056 35.2
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.9e-96 358.2 841 35.9
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 5.4e-96 356.7 1033 35.0
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 2.1e-95 354.8 891 37.5
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 2.1e-95 354.8 844 37.1
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 3.5e-95 354.0 972 36.6
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 4.3e-93 347.1 969 33.3
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.1e-84 318.2 932 34.9
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 4.6e-79 300.4 1010 32.2
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 6.6e-78 296.6 975 32.6
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 2.1e-76 291.6 659 41.3
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 5.8e-74 283.5 1035 32.2
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 4.9e-73 280.4 921 33.1
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.8e-68 264.6 970 32.7
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.2e-63 249.2 443 40.6
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.9e-61 241.9 933 30.0
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.3e-61 241.1 428 40.9
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.1e-59 236.1 949 31.0
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 5.7e-53 213.8 155 71.0
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 2.0e-50 205.3 245 51.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 4.6e-47 194.1 389 40.6
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.5e-45 188.3 158 63.3
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 3.6e-31 141.4 339 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.0e-30 139.8 1065 24.9
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 4.8e-28 131.0 159 49.7
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.1e-27 126.7 162 48.1
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.5e-26 124.8 306 43.8
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.1e-23 115.5 222 39.6
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 6.1e-23 114.0 97 62.9
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 5.3e-19 100.9 73 64.4
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 5.3e-19 100.9 1005 23.6
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.1e-15 89.0 465 30.5
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 2.0e-13 82.4 187 31.6
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.7e-13 80.9 94 52.1
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.3e-09 69.7 58 70.7
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 5.0e-09 67.8 188 30.9
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.9e-08 65.9 802 23.2
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 5.5e-08 64.3 141 36.9
MCO09G310 Micromonas commoda HOM05D005351 ORTHO05D006542 3.0e-06 58.5 211 26.5
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 6.8e-06 57.4 52 51.9


User provided reference genes

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