Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.3e-37 159.5 93 100.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.1e-20 103.2 95 68.4
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.4e-20 102.8 91 67.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.2e-20 101.7 83 73.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 4.1e-20 101.3 84 71.4
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 4.1e-20 101.3 88 69.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 9.2e-20 100.1 85 68.2
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 9.2e-20 100.1 85 68.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 9.2e-20 100.1 99 62.6
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.2e-19 99.8 96 65.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.2e-19 99.8 96 65.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.2e-19 99.8 83 71.1
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.6e-19 99.4 95 68.4
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.1e-19 99.0 92 66.3
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 2.7e-19 98.6 97 63.9
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.7e-19 98.6 96 64.6
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 6.0e-19 97.4 89 71.9
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 6.0e-19 97.4 83 69.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.0e-18 96.7 89 67.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.7e-18 95.9 84 67.9
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 3.0e-18 95.1 84 67.9
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 3.0e-18 95.1 77 72.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.1e-18 94.4 79 72.2
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-17 93.2 80 68.8
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-17 92.8 89 61.8
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.9e-17 92.4 84 66.7
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.5e-17 92.0 77 72.7
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.3e-17 91.3 84 64.3
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 5.6e-17 90.9 84 66.7
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 5.6e-17 90.9 95 64.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 5.6e-17 90.9 84 65.5
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.6e-17 90.9 84 65.5
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 7.3e-17 90.5 80 68.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 9.6e-17 90.1 85 64.7
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.2e-16 89.7 88 60.2
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.2e-16 89.7 86 64.0
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.6e-16 89.4 74 70.3
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.1e-16 89.0 87 60.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.8e-16 88.6 84 63.1
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.6e-16 88.2 82 63.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.6e-16 88.2 77 71.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.2e-16 87.4 82 64.6
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 6.2e-16 87.4 95 63.2
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 8.1e-16 87.0 84 63.1
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.1e-15 86.7 96 60.4
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-15 86.7 80 63.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.1e-15 86.7 84 63.1
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.8e-15 85.9 88 63.6
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.4e-15 85.5 84 65.5
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.0e-15 84.7 82 59.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.2e-15 84.3 83 60.2
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.2e-15 84.3 82 64.6
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.8e-15 84.0 83 61.4
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 6.8e-15 84.0 87 63.2
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 6.8e-15 84.0 83 61.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.8e-15 84.0 84 63.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 8.9e-15 83.6 82 61.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 8.9e-15 83.6 84 60.7
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 8.9e-15 83.6 85 60.0
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 8.9e-15 83.6 83 60.2
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.2e-14 83.2 80 65.0
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.5e-14 82.8 88 60.2
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.5e-14 82.8 54 81.5
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.5e-14 82.8 84 60.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.0e-14 82.4 85 62.4
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-14 82.4 89 57.3
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.0e-14 82.4 92 55.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.4e-14 81.3 85 60.0
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.8e-14 80.9 82 63.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.9e-14 80.1 86 61.6
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 9.9e-14 80.1 82 62.2
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 9.9e-14 80.1 85 60.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.3e-13 79.7 75 66.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.3e-13 79.7 91 58.2
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.3e-13 79.7 82 62.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.7e-13 79.3 79 59.5
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.7e-13 79.3 84 57.1
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.7e-13 79.3 84 57.1
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-13 79.3 84 59.5
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.2e-13 79.0 85 58.8
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.2e-13 79.0 82 63.4
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.2e-13 79.0 84 59.5
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 2.2e-13 79.0 83 61.4
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.2e-13 79.0 85 58.8
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.9e-13 78.6 84 59.5
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.8e-13 78.2 75 64.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.8e-13 78.2 87 57.5
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.8e-13 78.2 90 57.8
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.9e-13 77.8 82 61.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.9e-13 77.8 82 61.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.4e-13 77.4 59 71.2
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.4e-13 77.4 90 56.7
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 6.4e-13 77.4 85 61.2
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.4e-12 76.3 75 64.0
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.4e-12 76.3 82 59.8
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.4e-12 76.3 91 56.0
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.9e-12 75.9 84 59.5
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.9e-12 75.9 84 58.3
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.9e-12 75.9 75 58.7
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.4e-12 75.5 84 58.3
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 3.2e-12 75.1 59 69.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.2e-12 74.7 84 58.3
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 4.2e-12 74.7 85 58.8
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 9.3e-12 73.6 87 55.2
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.2e-11 73.2 84 58.3
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.2e-11 73.2 83 54.2
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 3.5e-11 71.6 80 55.0
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 6.0e-11 70.9 60 66.7
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.8e-11 70.5 90 56.7
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.8e-11 70.5 90 56.7
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 7.8e-11 70.5 83 53.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.3e-10 69.7 75 57.3
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.9e-10 68.2 82 57.3
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.9e-10 68.2 84 54.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 3.9e-10 68.2 91 51.6
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 3.9e-10 68.2 84 53.6
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 6.6e-10 67.4 80 58.8
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.6e-10 67.4 84 54.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.1e-09 66.6 84 46.4
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.1e-09 66.6 77 55.8
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.1e-09 66.6 76 56.6
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.5e-09 66.2 84 51.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.5e-09 66.2 86 55.8
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.5e-09 66.2 74 59.5
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.5e-09 66.2 84 56.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.5e-09 66.2 82 56.1
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.9e-09 65.9 82 47.6
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.3e-09 65.1 84 50.0
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.3e-09 65.1 92 48.9
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.3e-09 64.7 84 48.8
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.3e-09 64.7 84 48.8
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 5.6e-09 64.3 84 48.8
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 5.6e-09 64.3 84 48.8
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 5.6e-09 64.3 84 48.8
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.6e-09 64.3 66 53.0
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 5.6e-09 64.3 90 48.9
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 5.6e-09 64.3 78 55.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 9.6e-09 63.5 83 48.2
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 9.6e-09 63.5 84 46.4
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 9.6e-09 63.5 84 50.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.3e-08 63.2 84 48.8
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 82 47.6
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.3e-08 63.2 84 47.6
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.3e-08 63.2 84 46.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.6e-08 62.8 84 46.4
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.1e-08 62.4 84 46.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.8e-08 62.0 84 47.6
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 2.8e-08 62.0 82 46.3
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 2.8e-08 62.0 82 46.3
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.8e-08 62.0 84 48.8
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.8e-08 62.0 84 46.4
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.6e-08 61.6 84 47.6
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 3.6e-08 61.6 84 48.8
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 3.6e-08 61.6 84 48.8
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 4.8e-08 61.2 84 45.2
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 4.8e-08 61.2 83 48.2
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 4.8e-08 61.2 84 48.8
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 6.2e-08 60.8 82 47.6
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 6.2e-08 60.8 82 45.1
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 6.2e-08 60.8 69 58.0
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 8.1e-08 60.5 88 43.2
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 8.1e-08 60.5 88 50.0
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-07 59.7 84 44.0
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-07 59.7 55 60.0
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-07 59.7 82 45.1
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.4e-07 59.7 82 45.1
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.4e-07 59.7 84 46.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.4e-07 59.7 83 50.6
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-07 59.3 88 42.0
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.8e-07 59.3 82 51.2
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.4e-07 58.9 82 46.3
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 2.4e-07 58.9 84 47.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.0e-07 58.2 84 46.4
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 6.9e-07 57.4 78 44.9
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 9.0e-07 57.0 58 58.6
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 9.0e-07 57.0 82 48.8
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 1.2e-06 56.6 85 51.8
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.5e-06 56.2 58 62.1
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.5e-06 56.2 88 47.7
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 3.4e-06 55.1 85 47.1
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.4e-06 55.1 78 51.3
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 7.6e-06 53.9 92 47.8
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 9.9e-06 53.5 84 45.2
SEGI_32433 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 9.9e-06 53.5 88 46.6
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 9.9e-06 53.5 84 50.0


User provided reference genes

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