Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 4.6e-118 427.9 220 100.0
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 9.0e-82 307.4 188 80.3
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 6.5e-80 301.2 186 80.6
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.1e-71 273.9 205 69.3
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 2.7e-70 269.2 181 74.6
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 2.7e-70 269.2 191 72.3
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 3.0e-69 265.8 174 75.9
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.9e-68 263.1 179 71.5
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 1.9e-68 263.1 179 71.5
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.9e-68 263.1 171 77.2
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 2.5e-68 262.7 183 74.3
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 9.7e-68 260.8 188 72.3
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 1.6e-67 260.0 188 70.2
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 2.2e-67 259.6 191 69.1
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 6.3e-67 258.1 176 72.7
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.1e-66 257.3 188 67.0
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 1.1e-66 257.3 179 72.6
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 1.4e-66 256.9 178 69.1
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.4e-66 256.9 179 71.5
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 2.4e-66 256.1 183 73.8
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 5.3e-66 255.0 179 72.1
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 6.9e-66 254.6 181 67.4
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 9.0e-66 254.2 179 69.8
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.0e-65 253.1 179 68.7
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 2.6e-65 252.7 183 66.7
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 3.4e-65 252.3 179 71.5
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 5.9e-65 251.5 179 71.5
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 7.7e-65 251.1 175 71.4
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 1.0e-64 250.8 179 67.6
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 1.3e-64 250.4 172 69.8
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 1.3e-64 250.4 193 67.9
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 1.3e-64 250.4 161 74.5
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.7e-64 250.0 174 68.4
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 2.2e-64 249.6 179 72.1
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 2.2e-64 249.6 174 69.5
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 2.9e-64 249.2 182 69.8
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 8.5e-64 247.7 182 68.7
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 1.1e-63 247.3 175 69.1
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.4e-63 246.9 178 69.1
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 1.9e-63 246.5 164 71.3
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.2e-63 245.7 177 71.2
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 3.2e-63 245.7 179 69.3
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 3.2e-63 245.7 188 67.0
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 5.5e-63 245.0 172 71.5
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 7.2e-63 244.6 177 70.6
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 1.6e-62 243.4 176 70.5
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 2.1e-62 243.0 174 67.8
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 2.7e-62 242.7 210 57.1
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 4.6e-62 241.9 188 65.4
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 6.1e-62 241.5 146 82.9
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 7.9e-62 241.1 183 65.0
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 1.4e-61 240.4 172 71.5
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 1.8e-61 240.0 189 64.6
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 2.3e-61 239.6 163 73.6
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 5.1e-61 238.4 161 70.8
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 1.1e-60 237.3 182 67.6
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.1e-60 237.3 179 68.7
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 1.1e-60 237.3 177 68.9
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.3e-59 233.8 178 66.9
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 2.2e-59 233.0 175 66.9
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 2.2e-59 233.0 178 66.9
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 2.8e-59 232.6 151 74.2
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 8.2e-59 231.1 177 64.4
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 8.2e-59 231.1 190 64.2
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 4.1e-58 228.8 164 68.3
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 6.9e-58 228.0 165 70.3
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 1.5e-57 226.9 188 59.6
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 3.4e-57 225.7 171 66.1
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 5.9e-57 224.9 163 69.3
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 7.7e-57 224.6 173 64.7
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 1.0e-56 224.2 177 62.7
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 2.9e-56 222.6 171 64.9
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 3.8e-56 222.2 196 64.3
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 6.5e-56 221.5 179 68.2
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 8.5e-56 221.1 164 64.6
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 1.1e-55 220.7 179 61.5
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 1.1e-55 220.7 182 62.6
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.4e-55 220.3 176 62.5
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.9e-55 219.9 164 64.0
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.9e-55 219.9 147 70.7
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 2.5e-55 219.5 179 60.9
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 2.5e-55 219.5 164 64.0
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 3.2e-55 219.2 136 79.4
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 7.2e-55 218.0 166 66.9
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 7.2e-55 218.0 163 68.1
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 1.2e-54 217.2 236 51.7
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 4.4e-52 208.8 144 74.3
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 5.7e-52 208.4 179 60.3
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 2.2e-51 206.5 136 75.7
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 1.1e-50 204.1 180 60.0
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 5.3e-50 201.8 132 73.5
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 2.9e-48 196.1 170 60.6
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.1e-42 177.6 168 51.2
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 5.9e-41 171.8 203 49.8
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 3.8e-40 169.1 122 66.4
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.5e-39 167.2 177 52.0
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 9.8e-36 154.5 164 49.4
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 2.4e-34 149.8 155 53.5
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.6e-33 147.1 158 53.2
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 1.5e-31 140.6 101 72.3
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 1.8e-29 133.7 81 74.1
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 4.5e-25 119.0 165 41.2
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 5.0e-24 115.5 88 63.6
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 4.3e-23 112.5 121 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 8.9e-21 104.8 77 62.3
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.6e-20 103.2 183 35.0
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 6.4e-19 98.6 74 63.5
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 3.2e-18 96.3 159 40.9
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 7.0e-18 95.1 141 39.7
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 6.2e-14 82.0 61 60.7
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 6.0e-09 65.5 40 80.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.8e-06 56.6 79 39.2


User provided reference genes

Program Settings