Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 3.8e-154 548.1 278 100.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 7.6e-78 294.7 200 74.5
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.5e-76 288.5 200 71.5
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.5e-75 285.8 200 71.0
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.8e-74 283.5 200 75.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.8e-71 273.5 205 70.2
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 9.0e-71 271.2 200 68.5
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.5e-70 270.4 200 68.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.9e-70 268.5 200 67.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 5.9e-70 268.5 200 67.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.4e-68 263.8 200 67.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.9e-68 263.5 198 70.7
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.2e-67 260.8 198 69.7
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 3.6e-67 259.2 198 68.7
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 3.0e-66 256.1 198 68.2
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 6.7e-66 255.0 198 66.2
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.3e-65 252.3 190 67.9
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.3e-64 250.8 198 65.7
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 8.2e-64 248.1 200 66.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.1e-63 247.7 198 66.7
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.8e-63 246.9 199 67.3
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 2.4e-63 246.5 200 62.0
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 5.3e-63 245.4 198 66.7
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 5.3e-63 245.4 199 68.8
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.2e-62 244.2 198 66.2
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 3.4e-62 242.7 198 65.7
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 7.7e-62 241.5 198 64.6
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 6.5e-61 238.4 198 63.1
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.1e-60 237.7 185 67.6
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.9e-60 236.9 201 61.7
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 3.2e-60 236.1 198 62.6
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.2e-60 235.0 199 62.8
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.2e-59 234.2 199 62.8
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.6e-59 233.8 204 61.8
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.1e-59 233.4 199 62.3
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.6e-59 232.6 198 62.6
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.7e-59 232.3 198 62.6
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 4.7e-59 232.3 198 59.6
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.9e-58 229.2 204 60.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.1e-57 227.6 198 58.6
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.5e-57 227.3 185 64.3
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.7e-57 225.3 185 64.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.3e-56 224.2 186 64.5
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.7e-56 223.8 199 62.3
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 8.2e-56 221.5 198 58.1
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.8e-55 220.3 198 57.1
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 7.0e-55 218.4 198 55.6
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 9.1e-55 218.0 201 56.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 9.1e-55 218.0 198 57.6
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.0e-54 216.9 207 58.0
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 2.6e-54 216.5 198 57.1
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.6e-54 216.5 205 55.6
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.5e-54 216.1 199 59.3
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 4.5e-54 215.7 186 61.8
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 5.9e-54 215.3 165 69.7
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.9e-54 215.3 186 61.8
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.7e-54 214.9 200 55.5
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 7.7e-54 214.9 200 55.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.3e-53 214.2 198 55.6
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.9e-53 213.0 185 63.8
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 2.9e-53 213.0 198 56.1
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 6.5e-53 211.8 200 59.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 6.5e-53 211.8 188 62.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.1e-52 211.1 199 58.8
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.1e-52 211.1 199 57.8
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.2e-52 209.1 185 60.0
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 9.4e-52 208.0 200 53.0
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 9.4e-52 208.0 237 49.4
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 9.4e-52 208.0 186 58.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.6e-51 207.2 197 55.3
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.1e-51 206.8 200 55.0
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.7e-51 206.5 200 53.5
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 4.7e-51 205.7 200 55.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.1e-51 205.3 200 54.5
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 8.0e-51 204.9 200 52.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 8.0e-51 204.9 198 53.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.8e-50 203.8 200 52.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.3e-50 203.4 200 53.5
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.3e-50 203.4 202 53.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.9e-50 202.6 202 54.0
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 6.7e-50 201.8 185 59.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-49 200.7 171 63.2
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 4.4e-49 199.1 200 50.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 9.7e-49 198.0 200 51.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.1e-47 194.5 155 67.1
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.8e-47 193.7 233 49.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 7.0e-47 191.8 261 47.1
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.6e-46 190.7 180 55.6
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.7e-46 188.3 188 54.3
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.0e-45 188.0 185 52.4
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.3e-45 187.6 237 45.1
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 2.0e-41 173.7 162 58.0
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 3.4e-41 172.9 197 46.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 9.7e-41 171.4 167 56.3
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.8e-40 169.9 186 51.1
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.5e-36 156.8 187 50.8
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 7.2e-36 155.2 145 58.6
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 6.1e-35 152.1 149 55.7
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.5e-33 147.5 193 42.0
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.6e-33 146.7 140 57.9
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 2.8e-32 143.3 146 54.1
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 8.3e-32 141.7 185 42.7
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.1e-31 141.4 117 62.4
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.8e-31 140.6 111 66.7
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 5.4e-31 139.0 155 45.2
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.9e-29 133.3 155 46.5
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.9e-29 133.3 145 51.0
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.8e-29 132.9 144 51.4
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.1e-27 125.6 110 60.0
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.3e-26 123.6 109 58.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 6.8e-26 122.1 86 70.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.7e-24 117.5 89 65.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.0e-21 108.2 196 33.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 1.2e-19 101.3 191 32.5
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 8.0e-19 98.6 125 50.4
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 8.0e-19 98.6 105 47.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.0e-18 98.2 84 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.4e-18 97.8 155 38.1
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 7.5e-17 92.0 90 50.0
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 4.7e-11 72.8 61 55.7
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.7e-11 72.8 120 40.0
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.3e-08 64.7 54 64.8
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 4.9e-08 62.8 45 66.7
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.1e-07 61.6 61 49.2
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.4e-07 60.5 47 59.6
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 3.5e-06 56.6 35 74.3


User provided reference genes

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