Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 1.2e-148 530.0 302 100.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 6.5e-115 417.9 302 77.5
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.0e-104 382.5 302 71.9
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.5e-103 380.2 386 59.3
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-101 373.6 304 77.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.5e-100 369.0 337 65.0
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.8e-96 354.8 302 66.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.1e-93 347.4 302 65.6
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.8e-93 346.7 305 68.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 7.0e-93 344.7 303 65.0
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.6e-92 343.6 302 64.6
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.6e-92 343.6 302 64.9
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.0e-91 340.9 305 64.6
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.0e-91 340.9 289 66.4
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.0e-91 340.9 302 67.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.9e-91 339.3 302 63.2
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 2.9e-91 339.3 304 67.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 5.0e-91 338.6 302 64.9
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.1e-90 337.4 303 63.0
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.5e-90 337.0 302 62.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.9e-90 336.7 302 67.5
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.7e-89 332.8 302 65.9
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.4e-88 330.5 303 62.7
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.4e-88 330.5 305 64.6
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.4e-88 330.5 305 64.9
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 5.2e-88 328.6 303 64.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.5e-87 327.0 302 63.9
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.0e-87 326.6 302 61.9
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.0e-87 326.6 302 62.3
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.4e-87 325.9 303 63.7
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 4.4e-87 325.5 303 62.0
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.7e-87 325.1 302 61.6
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 5.7e-87 325.1 365 55.9
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.7e-87 325.1 302 62.9
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 5.7e-87 325.1 302 61.3
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 7.5e-87 324.7 302 62.6
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 7.5e-87 324.7 303 63.0
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 9.8e-87 324.3 302 60.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.3e-86 323.9 302 61.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.3e-86 323.9 302 61.6
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.2e-86 323.2 302 62.6
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.2e-86 323.2 304 62.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.8e-86 322.8 303 63.4
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.7e-86 322.4 302 61.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 6.3e-86 321.6 302 61.9
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 6.3e-86 321.6 301 62.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.8e-85 320.1 306 60.5
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.4e-85 319.7 302 61.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 3.1e-85 319.3 305 62.3
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.1e-85 318.9 302 62.3
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.4e-85 318.5 302 62.3
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 2.0e-84 316.6 320 59.7
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 7.7e-84 314.7 301 61.5
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.3e-83 313.9 302 60.3
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.7e-83 313.5 306 60.1
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.9e-83 312.8 306 60.5
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 5.0e-83 312.0 303 61.1
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 5.0e-83 312.0 396 53.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.5e-82 310.5 304 59.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 9.5e-82 307.8 305 60.0
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 9.5e-82 307.8 326 58.9
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.2e-81 307.4 303 58.4
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.6e-81 307.0 266 65.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.6e-81 307.0 292 61.3
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 2.1e-81 306.6 303 59.7
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.1e-81 306.6 305 60.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.8e-81 306.2 222 77.0
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 4.7e-81 305.4 305 60.3
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 4.7e-81 305.4 305 60.3
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 8.0e-81 304.7 307 59.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.4e-80 303.9 307 59.3
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.8e-80 303.5 302 60.6
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 3.0e-80 302.8 307 58.3
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 6.8e-80 301.6 301 57.8
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 6.8e-80 301.6 310 59.0
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.4e-79 299.3 334 55.7
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 5.7e-79 298.5 302 60.3
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 7.5e-79 298.1 307 57.7
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 9.8e-79 297.7 306 58.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.3e-78 297.4 306 58.2
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.2e-78 296.6 302 58.6
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 4.9e-78 295.4 276 61.2
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-77 293.9 262 64.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.1e-77 292.4 306 57.8
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.6e-76 290.4 314 56.7
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.9e-75 286.2 302 58.6
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 5.0e-75 285.4 317 55.5
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.2e-73 280.8 262 60.3
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 6.2e-73 278.5 307 57.7
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.4e-72 277.3 302 56.0
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 6.8e-72 275.0 306 55.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 8.9e-72 274.6 305 57.4
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.6e-71 273.1 259 60.2
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 7.5e-71 271.6 381 49.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 8.3e-70 268.1 302 53.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-69 266.9 306 55.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.0e-69 265.0 262 58.0
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 7.0e-69 265.0 295 54.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.2e-68 264.2 267 58.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.2e-68 264.2 308 53.2
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.6e-68 263.8 220 66.8
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.0e-68 261.9 183 82.0
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 7.8e-68 261.5 305 53.8
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.3e-67 260.8 305 53.4
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 6.4e-62 241.9 200 70.5
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-60 237.7 305 51.1
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 5.1e-59 232.3 303 50.2
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 2.5e-58 229.9 246 56.9
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.3e-58 228.4 310 51.0
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.6e-57 227.3 257 50.2
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.4e-56 224.2 181 70.7
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.2e-52 211.1 238 55.0
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.3e-51 206.8 184 66.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.6e-51 204.9 150 78.0
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 4.3e-50 202.6 177 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.1e-41 173.7 250 42.0
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.8e-41 173.3 250 42.0
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.8e-39 165.6 269 40.1
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 6.4e-38 162.2 131 68.7
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 6.4e-38 162.2 280 40.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.1e-36 157.1 228 42.1
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.3e-34 149.8 250 36.4
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.8e-33 146.0 124 65.3
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 6.2e-33 145.6 120 66.7
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.0e-32 142.9 170 57.1
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.7e-30 137.5 121 65.3
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 3.8e-30 136.3 191 44.5
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.6e-28 131.0 120 62.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.8e-27 127.5 237 35.4
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.3e-22 111.3 182 41.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 2.3e-19 100.5 80 72.5
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.7e-19 99.0 124 46.0
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.5e-18 97.1 98 56.1
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 6.9e-16 89.0 113 46.0
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.5e-15 87.8 113 45.1
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.0e-14 85.1 113 45.1
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 7.9e-12 75.5 67 56.7
unitig_748.g8292 Utricularia gibba HOM05D005102 ORTHO05D006090 5.7e-10 69.3 60 58.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 9.0e-08 62.0 178 28.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.5e-07 61.2 54 53.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.5e-07 61.2 54 53.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.5e-07 61.2 54 53.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.5e-07 61.2 54 53.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 2.9e-06 57.0 182 24.2


User provided reference genes

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