Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 8.6e-290 999.6 498 100.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 4.4e-225 784.6 500 78.6
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.1e-223 778.1 498 77.5
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 9.1e-223 776.9 501 77.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.0e-218 763.5 499 76.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.2e-204 715.3 512 70.1
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.2e-204 715.3 510 69.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.6e-201 705.7 510 69.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 9.8e-201 703.7 509 69.4
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.1e-199 700.3 512 69.3
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.6e-198 696.4 512 67.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.5e-198 695.3 565 65.3
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 7.7e-198 694.1 511 69.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.3e-197 693.3 510 68.2
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.3e-197 692.6 512 68.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-197 692.2 511 68.3
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.8e-197 691.8 512 67.8
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.8e-197 691.8 507 68.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 8.6e-197 690.6 513 68.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.9e-196 689.5 507 68.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-196 688.7 511 67.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 5.5e-196 688.0 508 66.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 7.2e-196 687.6 511 67.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.2e-195 686.8 515 67.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.6e-195 686.4 511 68.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.8e-195 685.6 506 66.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.7e-195 684.9 511 66.9
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 6.1e-195 684.5 511 67.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 6.1e-195 684.5 510 67.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.0e-194 683.7 512 66.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.3e-194 682.6 510 66.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.0e-194 682.2 511 66.5
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.2e-194 681.4 514 67.3
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.2e-194 681.4 515 67.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 8.9e-194 680.6 509 66.4
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-193 680.2 519 66.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.3e-192 676.8 509 67.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.7e-192 676.4 535 64.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.2e-192 676.0 500 68.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.9e-192 675.6 572 62.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.9e-192 674.9 507 67.5
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.3e-192 674.5 510 66.3
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 4.1e-191 671.8 510 66.5
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.0e-191 671.0 508 67.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.6e-190 669.8 511 65.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.6e-190 669.8 524 66.4
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.7e-190 669.1 510 65.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 3.5e-190 668.7 506 67.4
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 4.6e-190 668.3 510 65.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.6e-190 668.3 510 65.3
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 5.9e-190 667.9 510 65.5
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.3e-189 666.8 514 66.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.3e-189 666.0 509 65.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 5.0e-189 664.8 511 65.8
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 6.6e-189 664.5 510 65.9
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.6e-189 664.1 510 65.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-188 662.9 501 66.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-188 662.9 501 66.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 4.3e-188 661.8 512 64.6
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.6e-188 661.4 510 63.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.6e-188 661.4 511 65.4
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 5.6e-188 661.4 511 65.4
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.3e-188 661.0 513 66.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.3e-186 656.0 511 64.0
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.8e-186 654.4 510 63.7
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 5.8e-185 651.4 493 65.1
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 5.8e-185 651.4 504 64.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.5e-185 651.0 446 71.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 8.3e-184 647.5 513 63.7
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.4e-183 646.7 594 57.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 5.4e-183 644.8 510 64.1
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 9.2e-183 644.0 519 63.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.7e-182 642.5 512 63.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.6e-182 641.7 519 63.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 7.8e-182 641.0 499 64.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.7e-181 639.8 510 64.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.3e-181 639.4 518 63.1
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.0e-181 639.0 511 63.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 5.0e-181 638.3 518 63.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 6.2e-179 631.3 507 63.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.1e-178 629.0 523 62.1
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.2e-177 627.1 461 67.5
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-177 625.2 549 60.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 9.8e-177 624.0 432 71.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 8.3e-176 620.9 494 63.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.4e-175 619.4 510 61.2
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.2e-175 619.0 523 61.6
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-175 618.6 439 70.8
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.1e-175 618.6 505 62.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.4e-175 618.2 432 69.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.0e-174 614.8 496 64.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.8e-174 614.4 505 62.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.7e-171 605.1 498 61.4
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 8.1e-171 604.4 500 62.8
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 6.8e-170 601.3 500 62.8
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.2e-169 600.5 498 62.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 6.4e-168 594.7 563 56.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 8.1e-163 577.8 507 59.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.0e-162 575.5 527 59.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 7.6e-161 571.2 527 57.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.0e-157 560.8 440 64.3
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.3e-157 560.5 435 65.5
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.3e-149 533.1 355 73.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.0e-149 532.7 466 57.7
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 4.3e-148 528.9 400 67.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 5.6e-148 528.5 490 54.3
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-144 516.5 371 70.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-142 510.8 415 64.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.8e-141 506.9 503 54.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.0e-133 481.1 448 56.9
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 4.1e-122 442.6 384 60.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.0e-117 427.9 360 60.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.9e-117 426.0 476 47.7
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 5.9e-113 412.1 459 49.7
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.6e-110 404.1 431 50.3
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-109 401.4 391 57.8
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.2e-104 383.6 493 45.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.8e-96 356.3 276 62.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-96 355.9 327 59.9
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 9.2e-82 308.5 678 35.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 7.3e-79 298.9 459 39.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.0e-72 276.9 459 37.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 9.2e-66 255.4 478 37.0
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 7.8e-65 252.3 240 57.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-57 227.6 204 58.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.1e-57 227.6 360 36.4
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.8e-52 209.5 157 68.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 6.0e-49 199.5 482 31.5
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.7e-40 169.1 206 41.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.9e-34 151.4 102 69.6
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.4e-34 151.0 250 39.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-31 141.0 92 76.1
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 9.6e-31 139.0 133 55.6
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.9e-25 119.4 332 26.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.1e-23 115.5 107 56.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-15 86.7 61 68.9
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.0e-11 75.9 44 75.0
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.1e-10 72.4 49 71.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-09 68.2 66 60.6
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.6e-06 58.5 221 29.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.2e-06 58.2 229 24.9


User provided reference genes

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