Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9812 Avicennia marina HOM05D002521 ORTHO05D002872 3.4e-56 221.5 114 100.0
Migut.N00401 Erythranthe guttata HOM05D002521 ORTHO05D002872 5.6e-11 71.2 70 57.1
CSS0022307 Camellia sinensis var. sinensis HOM05D002521 ORTHO05D002872 4.8e-10 68.2 59 55.9
Cc03_g07990 Coffea canephora HOM05D002521 ORTHO05D002872 1.8e-09 66.2 50 68.0
Actinidia11448 Actinidia chinensis HOM05D002521 ORTHO05D002872 2.4e-09 65.9 51 64.7
Nitab4.5_0000401g0060 Nicotiana tabacum HOM05D002521 ORTHO05D002872 2.4e-09 65.9 50 64.0
Nitab4.5_0006210g0030 Nicotiana tabacum HOM05D002521 ORTHO05D002872 2.4e-09 65.9 50 64.0
CAN.G1333.10 Capsicum annuum HOM05D002521 ORTHO05D002872 5.3e-09 64.7 50 62.0
Actinidia28988 Actinidia chinensis HOM05D002521 ORTHO05D002872 1.2e-08 63.5 64 57.8
Oeu049039.1 Olea europaea HOM05D002521 ORTHO05D002872 1.2e-08 63.5 59 59.3
Solyc09g092070.4 Solanum lycopersicum HOM05D002521 ORTHO05D002872 2.0e-08 62.8 50 62.0
Sopen09g034940 Solanum pennellii HOM05D002521 ORTHO05D002872 2.0e-08 62.8 50 62.0
PGSC0003DMG400026413 Solanum tuberosum HOM05D002521 ORTHO05D002872 2.0e-08 62.8 50 62.0
Actinidia27493 Actinidia chinensis HOM05D002521 ORTHO05D002872 2.6e-08 62.4 62 53.2
Dinv38216 Davidia involucrata HOM05D002521 ORTHO05D002872 2.6e-08 62.4 58 53.4
Migut.G00712 Erythranthe guttata HOM05D002521 ORTHO05D002872 2.6e-08 62.4 50 66.0
SalBow3G0327 Salvia bowleyana HOM05D002521 ORTHO05D002872 3.4e-08 62.0 52 61.5
Solyc05g053710.4 Solanum lycopersicum HOM05D002521 ORTHO05D002872 3.4e-08 62.0 63 50.8
Sopen05g032190 Solanum pennellii HOM05D002521 ORTHO05D002872 3.4e-08 62.0 63 50.8
PGSC0003DMG400015757 Solanum tuberosum HOM05D002521 ORTHO05D002872 3.4e-08 62.0 69 47.8
Dinv27221 Davidia involucrata HOM05D002521 ORTHO05D002872 4.5e-08 61.6 58 55.2
Hma1.2p1_0187F.1_g082370 Hydrangea macrophylla HOM05D002521 ORTHO05D002872 4.5e-08 61.6 55 58.2
Peaxi162Scf00753g00336 Petunia axillaris HOM05D002521 ORTHO05D002872 5.8e-08 61.2 50 60.0
Oeu055769.1 Olea europaea HOM05D002521 ORTHO05D002872 1.7e-07 59.7 63 54.0
SGA_v2.0_scaffold128G34110 Striga asiatica HOM05D002521 ORTHO05D002872 1.7e-07 59.7 52 59.6
unitig_899.g14868 Utricularia gibba HOM05D002521 ORTHO05D002872 1.7e-07 59.7 70 50.0
CiPaw.02G065700 Carya illinoinensis HOM05D002521 ORTHO05D002872 2.9e-07 58.9 53 52.8
Haze_11619 Corylus avellana HOM05D002521 ORTHO05D002872 2.9e-07 58.9 53 54.7
MELO3C020360.2 Cucumis melo HOM05D002521 ORTHO05D002872 2.9e-07 58.9 58 48.3
CsaV3_2G011120 Cucumis sativus L. HOM05D002521 ORTHO05D002872 2.9e-07 58.9 58 48.3
Cfa014908 Carpinus fangiana HOM05D002521 ORTHO05D002872 3.8e-07 58.5 53 54.7
ClCG06G008070 Citrullus lanatus HOM05D002521 ORTHO05D002872 3.8e-07 58.5 58 48.3
FAN17G2246 Fragaria x ananassa HOM05D002521 ORTHO05D002872 3.8e-07 58.5 58 48.3
Lj3A402G9 Lonicera japonica HOM05D002521 ORTHO05D002872 3.8e-07 58.5 50 58.0
Potri.001G316700 Populus trichocarpa HOM05D002521 ORTHO05D002872 3.8e-07 58.5 49 57.1
Sabra17G0048600 Salix brachista HOM05D002521 ORTHO05D002872 3.8e-07 58.5 50 58.0
Sabra17G0050300 Salix brachista HOM05D002521 ORTHO05D002872 3.8e-07 58.5 50 58.0
SalBow8G3965 Salvia bowleyana HOM05D002521 ORTHO05D002872 3.8e-07 58.5 62 50.0
SalBow8G4524 Salvia bowleyana HOM05D002521 ORTHO05D002872 3.8e-07 58.5 62 50.0
FAN07G2651 Fragaria x ananassa HOM05D002521 ORTHO05D002872 4.9e-07 58.2 58 46.6
Nn3g20008 Nelumbo nucifera HOM05D002521 ORTHO05D002872 4.9e-07 58.2 68 47.1
ECA248G3656 Erigeron canadensis HOM05D002521 ORTHO05D002872 6.4e-07 57.8 50 56.0
FAN22G1042 Fragaria x ananassa HOM05D002521 ORTHO05D002872 6.4e-07 57.8 58 48.3
RcHm_v2.0_Chr4g0414611 Rosa chinensis HOM05D002521 ORTHO05D002872 6.4e-07 57.8 55 50.9
TWI09G1504 Tripterygium wilfordii HOM05D002521 ORTHO05D002872 6.4e-07 57.8 51 56.9
C08p01490 Brassica napus HOM05D001191 ORTHO05D000979 8.4e-07 57.4 78 43.6
BolC8t46957H Brassica oleracea HOM05D001191 ORTHO05D000979 8.4e-07 57.4 66 48.5
PGR083G2515 Punica granatum HOM05D002521 ORTHO05D002872 8.4e-07 57.4 51 51.0
arahy.Tifrunner.gnm1.ann1.6KXF36 Arachis hypogaea HOM05D002521 ORTHO05D002872 1.1e-06 57.0 58 51.7
vmacro00461 Vaccinium macrocarpon HOM05D002521 ORTHO05D002872 1.1e-06 57.0 51 54.9
vmacro15550 Vaccinium macrocarpon HOM05D002521 ORTHO05D002872 1.1e-06 57.0 62 48.4
Aqoxy2G03905 Aquilegia oxysepala HOM05D002521 ORTHO05D002872 1.4e-06 56.6 50 58.0
BcaC07g36878 Brassica carinata HOM05D002521 ORTHO05D002872 1.4e-06 56.6 78 43.6
Eucgr.H02770 Eucalyptus grandis HOM05D002521 ORTHO05D002872 1.4e-06 56.6 51 49.0
FvH4_4g13770 Fragaria vesca HOM05D002521 ORTHO05D002872 1.4e-06 56.6 58 48.3
FAN12G0343 Fragaria x ananassa HOM05D002521 ORTHO05D002872 1.4e-06 56.6 58 48.3
Rhsim02G0059700 Rhododendron simsii HOM05D002521 ORTHO05D002872 1.4e-06 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.IA90BR Arachis hypogaea HOM05D002521 ORTHO05D002872 1.9e-06 56.2 58 50.0
Cpa.g.sc83.12 Carica papaya HOM05D002521 ORTHO05D002872 1.9e-06 56.2 51 52.9
Lsat_1_v5_gn_6_61121 Lactuca sativa HOM05D002521 ORTHO05D002872 1.9e-06 56.2 67 44.8
GSVIVG01020911001 Vitis vinifera HOM05D002521 ORTHO05D002872 1.9e-06 56.2 55 52.7
Peaxi162Scf00047g00424 Petunia axillaris HOM05D002521 ORTHO05D002872 2.4e-06 55.8 32 75.0
BcaB03g13470 Brassica carinata HOM05D002521 ORTHO05D002872 3.2e-06 55.5 58 48.3
Duzib151G0193 Durio zibethinus HOM05D002521 ORTHO05D002872 3.2e-06 55.5 54 50.0
AT1G04830 Arabidopsis thaliana HOM05D002521 ORTHO05D002872 4.2e-06 55.1 51 52.9
COL.COLO4_20169 Corchorus olitorius HOM05D002521 ORTHO05D002872 4.2e-06 55.1 48 54.2
HanXRQChr01g0022431 Helianthus annuus HOM05D002521 ORTHO05D002872 4.2e-06 55.1 48 56.2
Rhsim09G0058100 Rhododendron simsii HOM05D002521 ORTHO05D002872 4.2e-06 55.1 59 47.5
Sed0012786 Sechium edule HOM05D002521 ORTHO05D002872 4.2e-06 55.1 58 48.3
Duzib268G0317 Durio zibethinus HOM05D002521 ORTHO05D002872 5.5e-06 54.7 58 51.7
QL06p025294 Quercus lobata HOM05D002521 ORTHO05D002872 5.5e-06 54.7 55 49.1
Thecc.04G200600 Theobroma cacao HOM05D002521 ORTHO05D002872 5.5e-06 54.7 48 54.2
Manes.03G146500 Manihot esculenta HOM05D002521 ORTHO05D002872 7.1e-06 54.3 58 48.3
Sed0012712 Sechium edule HOM05D002521 ORTHO05D002872 7.1e-06 54.3 66 43.9
AL1G14550 Arabidopsis lyrata HOM05D002521 ORTHO05D002872 9.3e-06 53.9 69 43.5
A08p36690 Brassica napus HOM05D001191 ORTHO05D000979 9.3e-06 53.9 92 40.2
BraA08t35572Z Brassica rapa HOM05D001191 ORTHO05D000979 9.3e-06 53.9 92 40.2
MD13G1283700 Malus domestica HOM05D002521 ORTHO05D002872 9.3e-06 53.9 58 46.6
PSO017G2637 Papaver somniferum HOM05D002521 ORTHO05D002872 9.3e-06 53.9 50 50.0
PSO063G4834 Papaver somniferum HOM05D002521 ORTHO05D002872 9.3e-06 53.9 50 50.0
TAR363G0001 Trochodendron aralioides HOM05D002521 ORTHO05D002872 9.3e-06 53.9 71 43.7


User provided reference genes

Program Settings